Jatropha Genome Database

JcCA0315891.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0315891.10 - phase: 0 /partial
         (145 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01027442001 assembled CDS                                       103   2e-23
GSVIVT01031218001 assembled CDS                                        50   3e-07

>GSVIVT01027442001 assembled CDS
          Length = 429

 Score =  103 bits (258), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 52/83 (62%), Positives = 67/83 (80%)

Query: 63  ISKSLIGSPARVQKLIASQSDALLAKEIFDYASRQPNFRHSYSSYLVLILKLGRSKYFSL 122
           +  S IGSP+RVQKLIASQSD LLAKEIFD AS QPNF+HSYSS+ +LILKLG ++ FSL
Sbjct: 51  VKPSPIGSPSRVQKLIASQSDPLLAKEIFDLASLQPNFKHSYSSFHILILKLGWARQFSL 110

Query: 123 IDEILIDLKSKHYVVKSNVFSYI 145
           + ++L+ LKS+ Y +  ++FS I
Sbjct: 111 MQDLLMRLKSEQYSINPSLFSDI 133


>GSVIVT01031218001 assembled CDS
          Length = 586

 Score = 50.4 bits (119), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 1/74 (1%)

Query: 70  SPARVQKLIASQSDALLAKEIFDYASR-QPNFRHSYSSYLVLILKLGRSKYFSLIDEILI 128
           SP RV  +I+ Q +  LA +IFD+A +   NF H+Y +YL +I KL +++ F  ++ ++ 
Sbjct: 100 SPKRVVSMISRQQNLDLALQIFDHAGKFHRNFAHNYETYLAMIEKLSKARAFEPMETLIS 159

Query: 129 DLKSKHYVVKSNVF 142
            L         N+F
Sbjct: 160 QLHKSQIKCGENLF 173