Jatropha Genome Database
- JcCA0315721.40
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCA0315721.40 + phase: 0 /partial
(59 letters)
Database: grape_pep_20100319
26,346 sequences; 9,959,944 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
GSVIVT01000156001 assembled CDS 86 4e-18
GSVIVT01037483001 assembled CDS 57 2e-09
GSVIVT01024857001 assembled CDS 55 6e-09
GSVIVT01024859001 assembled CDS 53 3e-08
GSVIVT01024948001 assembled CDS 51 1e-07
GSVIVT01010668001 assembled CDS 50 2e-07
GSVIVT01018437001 assembled CDS 50 2e-07
GSVIVT01024856001 assembled CDS 49 4e-07
GSVIVT01024042001 assembled CDS 48 8e-07
GSVIVT01010670001 assembled CDS 48 9e-07
GSVIVT01018438001 assembled CDS 47 1e-06
GSVIVT01006970001 assembled CDS 47 1e-06
GSVIVT01016735001 assembled CDS 45 5e-06
GSVIVT01037485001 assembled CDS 45 5e-06
GSVIVT01019897001 assembled CDS 45 8e-06
>GSVIVT01000156001 assembled CDS
Length = 585
Score = 85.9 bits (211), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 40/58 (68%), Positives = 46/58 (79%)
Query: 2 VKISVNPQVLNFSQAKEKKTFTVTVTGSSLPINTNAFARLEWSDGKHVVGSPIAVSWT 59
VKISV P L+FS+ EKK+F VT T +S+P NTN F R+EWSDGKHVVGSPI VSWT
Sbjct: 528 VKISVEPGSLSFSELNEKKSFKVTFTATSMPSNTNIFGRIEWSDGKHVVGSPIVVSWT 585
>GSVIVT01037483001 assembled CDS
Length = 741
Score = 57.0 bits (136), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/55 (50%), Positives = 36/55 (65%)
Query: 2 VKISVNPQVLNFSQAKEKKTFTVTVTGSSLPINTNAFARLEWSDGKHVVGSPIAV 56
+K+ VNP VL+F+ EKKTF VTV+G +L N A L W+DG H V SPI +
Sbjct: 681 MKVQVNPNVLSFTSLNEKKTFVVTVSGEALDKQPNVSASLVWTDGTHSVRSPIFI 735
>GSVIVT01024857001 assembled CDS
Length = 708
Score = 55.1 bits (131), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 38/60 (63%), Gaps = 7/60 (11%)
Query: 1 RVKISVNPQVLNFSQAKEKKTFTVTVTGSSL----PINTNAFARLEWSDGKHVVGSPIAV 56
R+K+ VNP +L+F KEKK+F VTVTG + P+ + A L WSDG H V SPI V
Sbjct: 645 RMKVDVNPPMLSFKLIKEKKSFVVTVTGQGMTMERPVES---ATLVWSDGTHTVRSPITV 701
>GSVIVT01024859001 assembled CDS
Length = 705
Score = 52.8 bits (125), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 35/59 (59%), Gaps = 8/59 (13%)
Query: 1 RVKISVNPQVLNFSQAKEKKTFTVTVTGSSL-----PINTNAFARLEWSDGKHVVGSPI 54
+K+ VNP +L+F KEKK+F VTV G L PI A A L WSDG H V SPI
Sbjct: 641 HIKVQVNPDILSFKLEKEKKSFVVTVVGQGLDSIEAPI---AAASLVWSDGTHSVRSPI 696
>GSVIVT01024948001 assembled CDS
Length = 703
Score = 50.8 bits (120), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Query: 1 RVKISVNPQVLNFSQAKEKKTFTVTVTGSSLPINTN--AFARLEWSDGKHVVGSPIAV 56
+K+ VNP L+F E K+F VTVTG L + A A L WSDG H V SPI V
Sbjct: 639 HIKVQVNPSTLSFKSLNETKSFLVTVTGDGLNFEKDPTASASLAWSDGNHHVRSPIFV 696
>GSVIVT01010668001 assembled CDS
Length = 751
Score = 50.4 bits (119), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/54 (51%), Positives = 35/54 (64%), Gaps = 6/54 (11%)
Query: 6 VNPQVLNFSQAKEKKTFTVTVTGSSL---PINTNAFARLEWSDGKHVVGSPIAV 56
V P VL FS EKK+F V +TGS + PI + A +EW+DG HVV +PIAV
Sbjct: 698 VEPPVLTFSDVGEKKSFKVIITGSPIVQVPIISGA---IEWTDGNHVVRTPIAV 748
>GSVIVT01018437001 assembled CDS
Length = 736
Score = 50.4 bits (119), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 36/54 (66%), Gaps = 6/54 (11%)
Query: 6 VNPQVLNFSQAKEKKTFTVTVTGSSL---PINTNAFARLEWSDGKHVVGSPIAV 56
V P VL FS+ EKK+F V +TGS + P+ + A +EW+DG HVV +PIAV
Sbjct: 646 VEPPVLTFSEVGEKKSFKVIITGSPIVQVPVISGA---IEWTDGNHVVRTPIAV 696
>GSVIVT01024856001 assembled CDS
Length = 1472
Score = 49.3 bits (116), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 35/56 (62%), Gaps = 2/56 (3%)
Query: 1 RVKISVNPQVLNFSQAKEKKTFTVTVTGSSLPINTNAFARLEWSDGKHVVGSPIAV 56
R+K+ V P VL+F E+K F V+V G L + + A L WSDG+H+V SPI V
Sbjct: 1410 RLKVRVIPNVLSFRSLYEEKHFVVSVVGKGLELMES--ASLVWSDGRHLVKSPIVV 1463
>GSVIVT01024042001 assembled CDS
Length = 795
Score = 48.1 bits (113), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 35/60 (58%), Gaps = 4/60 (6%)
Query: 2 VKISVNPQVLNFSQAKEKKTFTVTVTGSSLPINTN----AFARLEWSDGKHVVGSPIAVS 57
V ++V P L FS+ +K++F VTV+ S I F L WSDGKHVV SPI V+
Sbjct: 731 VTVAVKPAKLVFSEKMKKQSFVVTVSADSRKIEMGESGAVFGSLSWSDGKHVVRSPIVVT 790
>GSVIVT01010670001 assembled CDS
Length = 735
Score = 48.1 bits (113), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 34/55 (61%)
Query: 2 VKISVNPQVLNFSQAKEKKTFTVTVTGSSLPINTNAFARLEWSDGKHVVGSPIAV 56
++I V P VL+FS EKK+FTV V G + + + W+DG HVV +P+AV
Sbjct: 635 IEIEVEPPVLSFSAIGEKKSFTVRVYGPQINMQPIISGAILWTDGVHVVRAPLAV 689
>GSVIVT01018438001 assembled CDS
Length = 1131
Score = 47.4 bits (111), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 33/55 (60%)
Query: 2 VKISVNPQVLNFSQAKEKKTFTVTVTGSSLPINTNAFARLEWSDGKHVVGSPIAV 56
++I V P VL+FS EKK+FTV V G + + + W DG HVV +P+AV
Sbjct: 1017 IEIEVEPPVLSFSAIGEKKSFTVRVYGPQINMQPIISGAILWKDGVHVVRAPLAV 1071
>GSVIVT01006970001 assembled CDS
Length = 783
Score = 47.4 bits (111), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 2 VKISVNPQVLNFSQAKEKKTFTVTVTGSSLPINTN-AFARLEWSDGKHVVGSPIAVSWT 59
+ + V P+ L F + E+K F VT+ F RL WSDGKH VGSPI V+ T
Sbjct: 721 ISVKVEPKRLRFEKINEEKMFKVTIEAKRDDGGGEYVFGRLIWSDGKHFVGSPIVVNAT 779
>GSVIVT01016735001 assembled CDS
Length = 1791
Score = 45.4 bits (106), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 5/59 (8%)
Query: 2 VKISVNPQVLNFSQAKEKKTFTVTVT--GSSLPINTNAFARLEWSDGKHVVGSPIAVSW 58
VKI+V+P L F++ + ++ VT T G+SL F +EW+DG H V SP+AV W
Sbjct: 1109 VKINVSPSKLVFTEKNQVASYEVTFTSVGASL---MTEFGSIEWTDGSHRVRSPVAVRW 1164
>GSVIVT01037485001 assembled CDS
Length = 760
Score = 45.4 bits (106), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 29/47 (61%)
Query: 2 VKISVNPQVLNFSQAKEKKTFTVTVTGSSLPINTNAFARLEWSDGKH 48
+K+ VNP VL+F+ EKK+ VTV+G +L A L W+DG H
Sbjct: 638 MKVQVNPNVLSFTSLNEKKSLVVTVSGEALDKQPKVSASLVWTDGTH 684
>GSVIVT01019897001 assembled CDS
Length = 457
Score = 44.7 bits (104), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 38/57 (66%), Gaps = 2/57 (3%)
Query: 2 VKISVNPQVLNFSQAKEKKTFTVTVTGSSLPINTNAFAR--LEWSDGKHVVGSPIAV 56
V +SVNP L FS+ +K T++VT + +S ++ FA+ L+W GKH VGSPI++
Sbjct: 398 VDVSVNPDKLYFSKVNQKLTYSVTFSHNSSSGKSSKFAQGYLKWVSGKHSVGSPISI 454