Jatropha Genome Database

JcCA0315721.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0315721.30 - phase: 0 /partial
         (323 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01017885001 assembled CDS                                       346   6e-96
GSVIVT01034295001 assembled CDS                                       346   1e-95
GSVIVT01011107001 assembled CDS                                       309   1e-84
GSVIVT01025775001 assembled CDS                                       285   3e-77
GSVIVT01011886001 assembled CDS                                       258   2e-69
GSVIVT01031386001 assembled CDS                                       139   1e-33
GSVIVT01014230001 assembled CDS                                        86   3e-17

>GSVIVT01017885001 assembled CDS
          Length = 329

 Score =  346 bits (888), Expect = 6e-96,   Method: Compositional matrix adjust.
 Identities = 175/301 (58%), Positives = 224/301 (74%), Gaps = 11/301 (3%)

Query: 1   MRLSMS-LRQATNPPSHVLDIPTGRLKMDIVTPRWQKSKVVILMGATGTGKSRLSLDLAM 59
           MR  +S  +QA  P   +LDI    L M++  PR +K KVV ++GATGTGKS+LS+DLA 
Sbjct: 1   MRTILSACKQAQTP---LLDISG--LNMELFNPRRRKEKVVFVIGATGTGKSKLSIDLAT 55

Query: 60  QFPAEIINSDKMQVYKGLEVTTNKITEEESSGVPHHLLGVVNPNADFTAKDFCNMASLTI 119
           +FP+EIINSDKMQVYKGL + TNK+TEEE  GVPHHLLG+ +PN +FTA DFC+ ASL I
Sbjct: 56  RFPSEIINSDKMQVYKGLHIVTNKVTEEECRGVPHHLLGIADPNTNFTAMDFCHHASLAI 115

Query: 120 ESISIRGLLPIIVGGSNSYIEALVDD-PEFKFRSRYDCCFLWVDVSMLVLKEFLYKRVDE 178
           +SI+ R   PII GGSNS+IEALV D PEFK  SRY+CCFLWVDVS+ VL  F+ +RVD 
Sbjct: 116 QSITARNRHPIIAGGSNSFIEALVTDVPEFK--SRYECCFLWVDVSLPVLHRFVSERVDR 173

Query: 179 MVNKGMVDEVRNIFDPNADYSRGIRKSIGVPELDKHFRSELFLDEEESARVLQEAIREIK 238
           M+  G+V+EVR IFDP ADYSRGIR++IGVPE+D+  R E  + ++ +A+ L++AI +IK
Sbjct: 174 MLEAGLVEEVRRIFDPEADYSRGIRRAIGVPEMDQFLRGERIVGDKIAAQYLRKAIAKIK 233

Query: 239 SNNYKLALRQVEKIRRLKNVKGWNIHRIDATEFF--RNKDDDEMWKTLVGRPSIAIVRRF 296
            N  KLA  Q++KI RL+N++GW IHR+DATE F  R  D +E W+  V  PS+ IV  F
Sbjct: 234 ENTCKLACSQLDKIHRLQNIRGWKIHRLDATEAFLKRGDDAEEAWEKHVAGPSMDIVGCF 293

Query: 297 L 297
           L
Sbjct: 294 L 294


>GSVIVT01034295001 assembled CDS
          Length = 310

 Score =  346 bits (887), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 174/296 (58%), Positives = 216/296 (72%), Gaps = 17/296 (5%)

Query: 5   MSLRQATNPPSHVLDIPTGRLKMDIVTPRWQKSKVVILMGATGTGKSRLSLDLAMQFPAE 64
           M + + T P   +L +P G L M + + RW K KV ++MGATGTGKSRLS+D A +FPAE
Sbjct: 1   MLMCKQTQP---LLSMPPGGLTMAVSSHRWLKEKVAVVMGATGTGKSRLSIDPATRFPAE 57

Query: 65  IINSDKMQVYKGLEVTTNKITEEESSGVPHHLLGVVNPNADFTAKDFCNMASLTIESISI 124
           I+NS KMQVY+GL++ TNKITEEE  G PHH LG+ +PN DFTA DF +MASL+IESI  
Sbjct: 58  IVNSHKMQVYEGLDIITNKITEEEQPGAPHHHLGIAHPNVDFTASDFRDMASLSIESILG 117

Query: 125 RGLLPIIVGGSNSYIEALVDDPEFKFRSRYDCCFLWVDVSMLVLKEFLYKRVDEMVNKGM 184
              LPIIVGGSNSYI+A           RY+CCFLWVDVS  VL  F+ KRVD+MV  GM
Sbjct: 118 GRRLPIIVGGSNSYIDA-----------RYECCFLWVDVSRPVLHSFVSKRVDKMVGNGM 166

Query: 185 VDEVRNIFDPNADYSRGIRKSIGVPELDKHFRSELFLDEEESARVLQEAIREIKSNNYKL 244
           V+EV  +F PNADY+RGIR++IGVPELD +F +  FLDEE  A+VLQEA+ EIK+N  KL
Sbjct: 167 VEEVEQLFYPNADYTRGIRRAIGVPELDLYFPTG-FLDEEARAKVLQEAVHEIKANTCKL 225

Query: 245 ALRQVEKIRRLKNVKGWNIHRIDATEFF--RNKDDDEMWKTLVGRPSIAIVRRFLY 298
           A RQ+E I RLKN++ W IHR+DATE F   +++ DE W+ LV RPS  +V +FLY
Sbjct: 226 ACRQLEGIHRLKNLRKWKIHRLDATEVFLKHDREADEAWEKLVARPSTMMVAQFLY 281


>GSVIVT01011107001 assembled CDS
          Length = 275

 Score =  309 bits (791), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 158/300 (52%), Positives = 195/300 (65%), Gaps = 57/300 (19%)

Query: 1   MRLSMSLRQATNPPSHVLDIPTGRLKMDIVTPRWQKSKVVILMGATGTGKSRLSLDLAMQ 60
           M++ M +R+ T P   +L IP G L MD+   RW K KVV++MGATGTGKSRLS+DLA +
Sbjct: 1   MQIYMHMRKQTQP---LLSIPPGDLTMDVSGHRWPKGKVVVVMGATGTGKSRLSIDLATR 57

Query: 61  FPAEIINSDKMQVYKGLEVTTNKITEEESSGVPHHLLGVVNPNADFTAKDFCNMASLTIE 120
           FPAEI+NSDKMQVY+GL++ TNKITEEE  GVPHHLL + +PN                 
Sbjct: 58  FPAEIVNSDKMQVYEGLDIVTNKITEEEQRGVPHHLLRIAHPN----------------- 100

Query: 121 SISIRGLLPIIVGGSNSYIEALVDDPEFKFRSRYDCCFLWVDVSMLVLKEFLYKRVDEMV 180
                                              CCFLWVDVS  VL  F+ KRVD+MV
Sbjct: 101 -----------------------------------CCFLWVDVSRSVLHSFVSKRVDKMV 125

Query: 181 NKGMVDEVRNIFDPNADYSRGIRKSIGVPELDKHFRSELFLDEEESARVLQEAIREIKSN 240
            KGMV+EV+ +F PNADY+RGIR++IGVPELD +FR+E FLDEE  ARVLQEA+ EIK+N
Sbjct: 126 EKGMVEEVQQLFHPNADYTRGIRRAIGVPELDLYFRTEGFLDEEARARVLQEAVHEIKAN 185

Query: 241 NYKLALRQVEKIRRLKNVKGWNIHRIDATEFFR--NKDDDEMWKTLVGRPSIAIVRRFLY 298
             KLA RQ+EKI RLKNV+ W IHR+ ATE  R  +++ DE W+ LV RPS  +V +FLY
Sbjct: 186 TCKLACRQLEKIHRLKNVRKWKIHRLGATEVLRKCDREADEAWEKLVARPSTMMVAQFLY 245


>GSVIVT01025775001 assembled CDS
          Length = 258

 Score =  285 bits (728), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 133/257 (51%), Positives = 186/257 (72%), Gaps = 2/257 (0%)

Query: 43  MGATGTGKSRLSLDLAMQFPAEIINSDKMQVYKGLEVTTNKITEEESSGVPHHLLGVVNP 102
           MG+TG+GKSRLS+D+A  +  E+INSDKMQVYKGL++ TNK+ E +  GVPHHL+G V P
Sbjct: 1   MGSTGSGKSRLSIDIASHYLGEVINSDKMQVYKGLDIITNKMAESDRRGVPHHLIGEVEP 60

Query: 103 NADFTAKDFCNMASLTIESISIRGLLPIIVGGSNSYIEALVDDPEFKFRSRYDCCFLWVD 162
           + DFTA+DFC  A+  IE I  +G +PIIVGGSNS++EALV +P  +F+SRY+ CF+W++
Sbjct: 61  DVDFTAEDFCMAATSAIERIVEQGRVPIIVGGSNSFVEALVQNPSVEFKSRYEPCFIWLN 120

Query: 163 VSMLVLKEFLYKRVDEMVNKGMVDEVRNIFDPNADYSRGIRKSIGVPELDKHFRSELFLD 222
           V+  +L  +L KRVD+MV  G+V+EV+ +F PN DY RGI +SIGVPE+D + R++  + 
Sbjct: 121 VAPPILDTYLSKRVDDMVRGGLVEEVKAVFSPNLDYKRGIYRSIGVPEMDAYLRADRMVG 180

Query: 223 EEESARVLQEAIREIKSNNYKLALRQVEKIRRLKNVKGWNIHRIDATEFFR--NKDDDEM 280
             E   +L+EAI +IK+N  KLA +QV KI  L+N  GWN+H+ID T  F    ++ D  
Sbjct: 181 YIERETLLKEAIDDIKANTCKLASKQVGKIETLRNKLGWNMHQIDTTPVFEKCGEEADAA 240

Query: 281 WKTLVGRPSIAIVRRFL 297
           W+ LV +P+  I+  FL
Sbjct: 241 WEMLVKKPTFGIIDSFL 257


>GSVIVT01011886001 assembled CDS
          Length = 320

 Score =  258 bits (660), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 143/303 (47%), Positives = 191/303 (63%), Gaps = 43/303 (14%)

Query: 22  TGRLKMDIVTPRWQ-KSKVVILMGATGTGKSRLSLDLAMQFPAEIINSDKMQVYKGLEVT 80
           +G  +MD    R + K KVV++MGATGTGKS+LS+DLA +FPAEIINSDK+Q+Y GL++T
Sbjct: 32  SGWARMDSTVRRNRTKHKVVVIMGATGTGKSKLSIDLATRFPAEIINSDKIQIYSGLDIT 91

Query: 81  TNKITEEESSGVPHHLLGVVN-PNADFTAKDFCNMASLTIESISIRGLLPIIVGGSNSYI 139
           TNKI   E  GVPHHLLG  +  +A+ T   F ++A+  I  IS R  LP++ GGSNS+I
Sbjct: 92  TNKIQMHERQGVPHHLLGDFDSSHAEITPSQFRSVAAAAISDISSRRKLPVLAGGSNSFI 151

Query: 140 EALVDDPEFKFRS---------------RYDCCFLWVDVSMLVLKEFLYKRVDEMVNKGM 184
            AL+ D   +F S               RY CCFLWVDVS  VL ++L KRVDEM+  GM
Sbjct: 152 HALLVD---RFDSESDPFNGSDSVSTELRYRCCFLWVDVSFAVLSDYLSKRVDEMLGSGM 208

Query: 185 VDEVRNIFDPNADYSR---GIRKSIGVPELDKHFRSELFLDEEESARVLQEAIREIKSNN 241
           ++E+   +DP+ D SR   G+RK+IGVPE D+HFR+             +EA++ IK N 
Sbjct: 209 LEELAKFYDPDEDESRPKTGLRKAIGVPEFDRHFRN------------FEEAVKAIKDNT 256

Query: 242 YKLALRQVEKIRRLKNVKGWNIHRIDATEFFR-------NKDDDEMWKTLVGRPSIAIVR 294
             LA +Q+EKI R++   GW++ R+DATE FR        K   E+W+  V  PS+  VR
Sbjct: 257 CHLAKKQIEKILRMRGA-GWDLKRLDATEAFRVLLSSDSGKKSSEIWEKQVVEPSVKFVR 315

Query: 295 RFL 297
           RFL
Sbjct: 316 RFL 318


>GSVIVT01031386001 assembled CDS
          Length = 474

 Score =  139 bits (351), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 67/122 (54%), Positives = 90/122 (73%)

Query: 22  TGRLKMDIVTPRWQKSKVVILMGATGTGKSRLSLDLAMQFPAEIINSDKMQVYKGLEVTT 81
            G  K++   P   K+KVV++MGATG+GKS+L++DLA  FP EIINSD MQVY+GL+V T
Sbjct: 5   NGGQKVENPNPNPNKTKVVVIMGATGSGKSKLAIDLASHFPIEIINSDSMQVYQGLDVLT 64

Query: 82  NKITEEESSGVPHHLLGVVNPNADFTAKDFCNMASLTIESISIRGLLPIIVGGSNSYIEA 141
           NK+   E +GVPHHLLG ++ N +FT+KDF + A   I+ I  R  LP++VGG+N YI+A
Sbjct: 65  NKVPLHEQNGVPHHLLGTISSNVEFTSKDFRDSAIPLIDDIISRNNLPVLVGGTNYYIQA 124

Query: 142 LV 143
           LV
Sbjct: 125 LV 126



 Score = 99.4 bits (246), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 59/166 (35%), Positives = 95/166 (57%), Gaps = 22/166 (13%)

Query: 153 RYDCCFLWVDVSMLVLKEFLYKRVDEMVNKGMVDEVRNIFDPNADYSRGIRKSIGVPELD 212
           +Y CCF+ VD ++ +L  ++ +RVD M++ G++DEV +I+  NADY+RG+R++IGV E +
Sbjct: 222 KYRCCFICVDAALPILDGYVGQRVDSMIDAGLLDEVYDIYSLNADYTRGLRQAIGVREFE 281

Query: 213 KHFR---SELFLDEE------------------ESARVLQEAIREIKSNNYKLALRQVEK 251
              +   SE   D+E                  +   +LQEAI  +K+N  +L  RQ  +
Sbjct: 282 DFLKVLLSEGGHDKENGLLKGNVREILKSSNNDQHNILLQEAIERVKANTRRLVRRQKRR 341

Query: 252 IRRLKNVKGWNIHRIDATEFFRNKDDDEMWKTLVGRPSIAIVRRFL 297
             RL+++ GW+IH +DATE   + +    W   V  PS+ I+R FL
Sbjct: 342 FNRLQSLFGWDIHYVDATE-SSSCNPSASWAADVVEPSVKIIRSFL 386


>GSVIVT01014230001 assembled CDS
          Length = 432

 Score = 85.5 bits (210), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 41/113 (36%), Positives = 68/113 (60%)

Query: 31  TPRWQKSKVVILMGATGTGKSRLSLDLAMQFPAEIINSDKMQVYKGLEVTTNKITEEESS 90
           T +  K KV+++ G TG GKSRL+L+LA +   EII++D +QVY+GL+V + K +  +  
Sbjct: 27  TKKKNKEKVIVISGPTGAGKSRLALELAKRLNGEIISADSVQVYRGLDVGSAKPSLMDRK 86

Query: 91  GVPHHLLGVVNPNADFTAKDFCNMASLTIESISIRGLLPIIVGGSNSYIEALV 143
            VPHHL+ +++P+ D++   F   A      I     +PI+ GG+  Y+   +
Sbjct: 87  EVPHHLVDILHPSEDYSVGQFFEDAREKTRDILNSERVPIVAGGTGLYLRWFI 139