Jatropha Genome Database

JcCA0315721.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0315721.20 + phase: 0 
         (143 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01011106001 assembled CDS                                        82   1e-16

>GSVIVT01011106001 assembled CDS
          Length = 113

 Score = 81.6 bits (200), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 32/55 (58%), Positives = 44/55 (80%)

Query: 88  SAVENCCRWLSDVDNECVCDLLIRLPIFLARPAHQFTIVIGDTCTITFSCSGRVR 142
           SA E CCRWL ++D+ECVCDLL  LP+FL RP+H +T+ +  +C++TFSC GR+R
Sbjct: 58  SAEEACCRWLKEIDDECVCDLLAHLPLFLTRPSHYYTVSVDPSCSVTFSCGGRLR 112