Jatropha Genome Database

JcCA0315581.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0315581.20 - phase: 0 
         (270 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01008885001 assembled CDS                                       280   4e-76
GSVIVT01009149001 assembled CDS                                        58   6e-09

>GSVIVT01008885001 assembled CDS
          Length = 273

 Score =  280 bits (717), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 141/269 (52%), Positives = 180/269 (66%), Gaps = 1/269 (0%)

Query: 3   GHRAIEAAKTVIEVADVAWKAMEFTXXXXXXXXXXXXXXITHAS-IDEELESLRSENRCX 61
           G+  IE AKTV+EVA+VAW A+E                   +   + +LESLR+ENR  
Sbjct: 5   GNVPIEVAKTVLEVAEVAWSAIETHHHIHQHHHDHDYNHDHDSPPSNHDLESLRTENRRL 64

Query: 62  XXXXXXXXXXXXXXXXXPCLLNDCPPDLHARLVATVDSEDFLARLKSLQLASANISGIEF 121
                            PCL  DCPPDLHARL ATVDS+ FL+RLKSL  AS + +   F
Sbjct: 65  RSLLQKNLELLQDLSHSPCLSKDCPPDLHARLAATVDSKHFLSRLKSLHGASVDGATNGF 124

Query: 122 PFKEATGDDMHSAEMLINVSNEEPSWWVWVTEEMAPNNIEERSRIDNENYXXXXXXXXXX 181
           PFKEATG+D+HSAE+LINV  EEPSWWVWVT+E  PN +EE S ID+ENY          
Sbjct: 125 PFKEATGEDLHSAEILINVDPEEPSWWVWVTDEAVPNKVEEWSEIDDENYVVISEEHVVD 184

Query: 182 XXXNFMAKCILSNPKAQKMTPEELQKSLEKALEGVSKWEKILNIWHAGQLFYTLATWGLA 241
              NF+A+CILSNPK   +TPEELQK++  ++  ++K+EK+ ++WHAG +FYTLATWG+A
Sbjct: 185 GVANFIARCILSNPKTLNLTPEELQKAVSVSVSSMNKYEKMASVWHAGMMFYTLATWGIA 244

Query: 242 LWGLYRTRSILKLAAKGVHKTSKVVLKAL 270
           L GLYR+R+++KLAAKGVH TSK ++KAL
Sbjct: 245 LAGLYRSRAVMKLAAKGVHTTSKFIMKAL 273


>GSVIVT01009149001 assembled CDS
          Length = 240

 Score = 57.8 bits (138), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 39/142 (27%), Positives = 72/142 (50%), Gaps = 8/142 (5%)

Query: 131 MHSAEMLI--NVSNEEPSWWVWVTEEMAPNNIEER--SRIDNENYXXXXXXXXXXXXXNF 186
           + SA++ +  N+S EE S W  + +    N++ E   S +D ENY              F
Sbjct: 101 LESAQVSVPQNISAEEGSSWDMIND----NDLWEGGISDLDQENYVLVRQEDIVEGIACF 156

Query: 187 MAKCILSNPKAQKMTPEELQKSLEKALEGVSKWEKILNIWHAGQLFYTLATWGLALWGLY 246
           MA  +LS  + +++TP +LQ++L K      K  K+   W   ++ Y +A+WG    G+Y
Sbjct: 157 MAAYLLSLKQTKELTPNQLQEALSKTFSVKKKKGKLRKAWDGSKVIYNVASWGATAIGIY 216

Query: 247 RTRSILKLAAKGVHKTSKVVLK 268
           +  ++L++A+     + +V+ K
Sbjct: 217 QNPALLRVASAAFWTSCRVISK 238