Jatropha Genome Database

JcCA0315371.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0315371.20 - phase: 0 /partial
         (175 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01036033001 assembled CDS                                       214   2e-56

>GSVIVT01036033001 assembled CDS
          Length = 771

 Score =  214 bits (545), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 99/162 (61%), Positives = 124/162 (76%)

Query: 1   VAAISEQASESTGEAAKSEENPSDTLEWKSFDIRAVVSATEDLLLFILSEKGSRVRVFLV 60
           +AA+SEQASES  E   ++ N S  LEWKSFD+RAVV+ATEDL  FILS KG RVRVFL+
Sbjct: 579 IAAVSEQASESAEEPPDTKGNSSSPLEWKSFDMRAVVAATEDLFQFILSRKGLRVRVFLI 638

Query: 61  RDIIKVADVFLRDKIVGCILDQKREGNEASKSEGHSTFMRVVNGFQYLRQAVKLAPELWT 120
           RDII   D+FL+D++V CI  +K      S+SEG +   RV+NGFQYL+QA+ LAPE+WT
Sbjct: 639 RDIISATDIFLQDEVVACIFYEKLGAKAPSESEGDAVLTRVINGFQYLKQAINLAPEVWT 698

Query: 121 AMLIRMALKPEFHSFILDIMSALVVHFNHKVPETSWVFMSRL 162
            MLIRM+LKPE HSF+LDI+SAL +HF HK+PET W + + L
Sbjct: 699 GMLIRMSLKPEVHSFMLDIISALAIHFRHKIPETFWAWNAYL 740