Jatropha Genome Database

JcCA0315091.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0315091.30 + phase: 0 /partial
         (188 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01011646001 assembled CDS                                       335   8e-93

>GSVIVT01011646001 assembled CDS
          Length = 224

 Score =  335 bits (859), Expect = 8e-93,   Method: Compositional matrix adjust.
 Identities = 165/188 (87%), Positives = 169/188 (89%)

Query: 1   VQRMVVSTYQXXXXXXXXXMEELELQTREVLEGKPPTCNIFKQQYAFNLFSHNAPVLENG 60
           V RMVVSTYQ         MEELELQTREVLEGK PTC IFKQQYAFNLFSHNAPVL NG
Sbjct: 37  VVRMVVSTYQAASGAGAAAMEELELQTREVLEGKQPTCKIFKQQYAFNLFSHNAPVLPNG 96

Query: 61  YNEEEMKLVKETRKIWNDMNVKVTATCIRVPVMRAHAESVNLQFEKPLDEDTARAILKNA 120
           YNEEEMKLVKETRKIWNDMNVKVTATCIRVPVMRAHAESVNLQFE PLDED AR ILKNA
Sbjct: 97  YNEEEMKLVKETRKIWNDMNVKVTATCIRVPVMRAHAESVNLQFENPLDEDKARDILKNA 156

Query: 121 AGVVVIDDRASNHFPTPLEVSNKDDVAVGRIRRDVSQEGNHGLDIFVCGDQIRKGAALNA 180
            GVVVID+R SN+FPTPLEVSNKDDVAVGRIRRDVSQ+GN GLDIFVCGDQIRKGAALNA
Sbjct: 157 PGVVVIDERPSNNFPTPLEVSNKDDVAVGRIRRDVSQDGNFGLDIFVCGDQIRKGAALNA 216

Query: 181 IQIAELLL 188
           IQIAE+LL
Sbjct: 217 IQIAEMLL 224