Jatropha Genome Database

JcCA0315091.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0315091.10 + phase: 2 /partial
         (121 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01011647001 assembled CDS                                       169   3e-43
GSVIVT01008660001 assembled CDS                                        86   3e-18
GSVIVT01001094001 assembled CDS                                        82   6e-17

>GSVIVT01011647001 assembled CDS
          Length = 262

 Score =  169 bits (428), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 81/113 (71%), Positives = 93/113 (82%)

Query: 1   SFRGREIGNEKLIGILDLQQITYRNTDARGLITGFQFLQAYYPERLAKCFILHMPXXXXX 60
           SF+GREIGNEKLIGILDLQQIT++N DARGLITGFQFLQ+YYPERLA+CFIL+MP     
Sbjct: 123 SFKGREIGNEKLIGILDLQQITFKNVDARGLITGFQFLQSYYPERLARCFILNMPGFFVS 182

Query: 61  XXXXXXXXLEKATQEKIVIVSNEEERENFMKEIGEEILPEEYGGQAKLVPIQD 113
                   LEKAT EKIVIVSNE ER +F+KEIGEE LPEEYGG++ L+ +QD
Sbjct: 183 VWRMVSYFLEKATLEKIVIVSNEAERRDFIKEIGEEALPEEYGGRSNLIALQD 235


>GSVIVT01008660001 assembled CDS
          Length = 256

 Score = 86.3 bits (212), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 44/106 (41%), Positives = 59/106 (55%)

Query: 8   GNEKLIGILDLQQITYRNTDARGLITGFQFLQAYYPERLAKCFILHMPXXXXXXXXXXXX 67
           G EK + I DL+   Y N+D R  +     LQ YYPERL K FI+H P            
Sbjct: 150 GQEKFVVIGDLEGWGYSNSDMRAYLGALSILQDYYPERLGKLFIIHAPYIFMAIWKIVYP 209

Query: 68  XLEKATQEKIVIVSNEEERENFMKEIGEEILPEEYGGQAKLVPIQD 113
            ++K T++KIV+V   + R   ++EI E  LP+ YGG+  LVPIQD
Sbjct: 210 FIDKNTKKKIVLVEKTKLRSTLLEEIDESQLPQIYGGKLPLVPIQD 255


>GSVIVT01001094001 assembled CDS
          Length = 246

 Score = 82.0 bits (201), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 39/106 (36%), Positives = 57/106 (53%)

Query: 8   GNEKLIGILDLQQITYRNTDARGLITGFQFLQAYYPERLAKCFILHMPXXXXXXXXXXXX 67
           G EK I I D++   Y N+D R  +     LQ  YPERL K F++H+P            
Sbjct: 140 GEEKFISIADIEGWGYTNSDIRAYLAALSILQDCYPERLGKLFLVHVPYVFMTAWKVVYP 199

Query: 68  XLEKATQEKIVIVSNEEERENFMKEIGEEILPEEYGGQAKLVPIQD 113
            ++  T++KI+ V N+  +   + +I E  LP+ YGG+  LVPIQD
Sbjct: 200 FIDSKTKKKIIFVENKNIKSTLLGDIDENQLPDVYGGKLPLVPIQD 245