Jatropha Genome Database

JcCA0314681.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0314681.10 - phase: 0 
         (187 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01015511001 assembled CDS                                       247   2e-66

>GSVIVT01015511001 assembled CDS
          Length = 187

 Score =  247 bits (630), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 116/187 (62%), Positives = 137/187 (73%)

Query: 1   MSGGSPVGGGYMRQRHSQGYASGGDDLEDDACXXXXXXXXXXXXXXXWVEIVENVLWIAS 60
           MSGG+PVGGG+MRQRHSQGYAS GDDLEDDAC               W E++EN+LWIAS
Sbjct: 1   MSGGTPVGGGFMRQRHSQGYASSGDDLEDDACSRQTPSSPAMPRARTWTEVMENILWIAS 60

Query: 61  AIFIVYFGDRHSNLIYLLWHDERIRRLPLYLGMVGAGVNLVIFLYTSMFTWGVRRFDEKW 120
           A+FI+Y+GDR+SN IYLL HD+RIRRLPLYLGMVG  +N++IF YTSMF  GV++F EKW
Sbjct: 61  AVFIIYYGDRNSNFIYLLLHDDRIRRLPLYLGMVGVSLNILIFFYTSMFASGVKKFCEKW 120

Query: 121 ELSSISALPLVTLLGLVSFCLLSFALWPVWSXXXXXXXXXXXMASMVICPHIMIVTFRQQ 180
           ELSS SALP +TLLGLVSFCL SFALWP+WS           MA +V  P++M  T R Q
Sbjct: 121 ELSSPSALPFLTLLGLVSFCLFSFALWPIWSFLTLPLLFTLFMACIVASPYVMTGTLRPQ 180

Query: 181 NDTFRID 187
            +  R D
Sbjct: 181 TEVLRTD 187