Jatropha Genome Database

JcCA0314481.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0314481.20 - phase: 1 /partial
         (505 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01014998001 assembled CDS                                       698   0.0  

>GSVIVT01014998001 assembled CDS
          Length = 1052

 Score =  698 bits (1802), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/509 (67%), Positives = 396/509 (77%), Gaps = 4/509 (0%)

Query: 1    IVNKEANKISLKVGKIQENDVKKDCDTKRKTGVLIIGAGRVCRPAVEFLASIGSISSHEC 60
             ++KE NKISLKVGK+ E     + D K K GVLI+GAGRVC+P  E L + GS+SS + 
Sbjct: 544  FLSKETNKISLKVGKVLERGNMMELDDKEKPGVLILGAGRVCQPVAEVLTTAGSVSSRQL 603

Query: 61   YKACLDTDFEEQNDVQVFVASLYLKDAEEIIEGIPNATAVQLDVMDNESLCKYISQAEVV 120
            +K C ++DFE Q+D+QV VASLYLKDAEEIIEG+PNATA+QLDVMD+E+L KYISQ EVV
Sbjct: 604  FKMCQESDFEGQSDIQVIVASLYLKDAEEIIEGLPNATAIQLDVMDHENLHKYISQVEVV 663

Query: 121  VSLLPPSCHIIIANACIKLSKHLVTASYIDDSMSALDEKAKAADITILGEMGMDPGIDHM 180
            +SLLP SCH I+ANACI+L KHLVTASYIDDSMS LDE+AK A ITILGEMG+DPGIDHM
Sbjct: 664  ISLLPASCHFIVANACIELKKHLVTASYIDDSMSKLDERAKGAGITILGEMGLDPGIDHM 723

Query: 181  MAMKMINQAHVRKGRLKSFTSYCGXXXXXXXXXXXXXYKFSWSPAGVIRAGRNPATYRLN 240
            MAM MI+QAHV+ G+++SF SYCG             YKFSW+PAG IR+GRNPATYR +
Sbjct: 724  MAMMMIDQAHVQGGKIRSFISYCGGLPSPEAANNPLAYKFSWNPAGAIRSGRNPATYRSH 783

Query: 241  GEIVHIDGDSLYDSAFKLRIPHLPAFALECLPNRDSLVYEKVYGIE-EASTIFRGTLRYE 299
            GE V I+G+SLYDSA   RIP LPAFALE LPNR+SLVY  +YGI+ EASTIFRGTLRYE
Sbjct: 784  GETVSINGESLYDSAVSFRIPDLPAFALEILPNRNSLVYGDLYGIDHEASTIFRGTLRYE 843

Query: 300  GFGEIMGILARIGFFRTEPHPVLRCERRPTFKTFLCELLKIPGENLSGE---KDITENIV 356
            GF EIMG LARIGFF TE HP+L   +RPTF  FL ELLKI  E+  G    +DI E I+
Sbjct: 844  GFAEIMGTLARIGFFDTEAHPILTLTKRPTFGAFLLELLKIKSEDFDGTMTAEDIKERIL 903

Query: 357  TLGHCXXXXXXXXXXXXIIFLGFDEQTEIPASCRSAFDVTCYRMEERLVYSSTEQDMVLL 416
             LG C            I++LGF EQTEIP SCRSAFDV C RMEERL YSS EQDMVLL
Sbjct: 904  ALGLCKVQVTALKTAKTILYLGFHEQTEIPVSCRSAFDVACLRMEERLAYSSEEQDMVLL 963

Query: 417  HHEIVVEFPDGQRPERHSATLLEFGTSKNGKTVTAMALTVGIPAAIGAXXXXENKIKSRG 476
            HHE+ VEFPDG+  E+H ATLLEFG +KNGKT TAMA TVGIPAAIGA    E KIK+RG
Sbjct: 964  HHEVEVEFPDGRPVEKHRATLLEFGKTKNGKTTTAMAFTVGIPAAIGALLILEKKIKTRG 1023

Query: 477  VLRPTEPEVYMPALEILQAHGIKLIEKVE 505
            VLRP EP+VY+PAL+ILQA+G+KL+EK E
Sbjct: 1024 VLRPIEPQVYVPALDILQAYGLKLLEKTE 1052