Jatropha Genome Database

JcCA0314481.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0314481.10 + phase: 0 
         (355 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01014997001 assembled CDS                                       409   e-114

>GSVIVT01014997001 assembled CDS
          Length = 364

 Score =  409 bits (1051), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 209/293 (71%), Positives = 230/293 (78%), Gaps = 25/293 (8%)

Query: 72  TGSASVGFRINRGRGVCLTVIGCSDSHKPPRAVA---------APQNQLVREFENRLEDG 122
             S S GFRI       L++ GCSDS+K  R V          + Q Q++R+FE  L D 
Sbjct: 85  AASTSNGFRIG------LSMRGCSDSNK--RRVDRNGHGAFAHSYQQQVLRDFEIGLPD- 135

Query: 123 SSSKTSARYINGHETCQGGKPLGFPDYPLTGKIVVAVDVDEVLGNFVSALNRFIADRYSS 182
                 A    GH     GK LGFP  PL  KIVVAVDVDEVLGNFVSALNRFIADRYS 
Sbjct: 136 ------AGIPTGHGASHHGKLLGFPLRPLPEKIVVAVDVDEVLGNFVSALNRFIADRYSL 189

Query: 183 NHSVAEYHVYEFFKIWKCSHDEANIRVHEFFKTSYFKSGIYPIPGAQKVLHKLSRLCNLS 242
            HSV+EYHVYEFFKIW CS DEA+IRVHEFFKTSYFK+GI+PIPGAQ+ LHKLSR CNLS
Sbjct: 190 KHSVSEYHVYEFFKIWNCSRDEADIRVHEFFKTSYFKTGIHPIPGAQQALHKLSRFCNLS 249

Query: 243 VVTSRQNVIKDHTIEWIEKHYPGVFHEIHFGNHFALDGESRPKSEICRTLGATVLIDDNP 302
           +VTSRQN IKDHTIEWIEKHYPG+F EIHFGNHFALDGESRPKSEICR+LGA VLIDDNP
Sbjct: 250 IVTSRQNAIKDHTIEWIEKHYPGLFQEIHFGNHFALDGESRPKSEICRSLGAKVLIDDNP 309

Query: 303 RYAIECAEAGIKVLLFDYENSYPWCKTDLV-RHPLVTKVHNWEQVEQQLISWI 354
           RYAIECAE GI+VLLFDYENSYPWCKT+ V +HPLVTKVH+WE+VEQQL+SWI
Sbjct: 310 RYAIECAEIGIRVLLFDYENSYPWCKTESVSQHPLVTKVHDWEEVEQQLVSWI 362