Jatropha Genome Database

JcCA0314231.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0314231.10 + phase: 0 /pseudo/partial
         (300 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01032163001 assembled CDS                                       438   e-123
GSVIVT01013726001 assembled CDS                                       253   8e-68
GSVIVT01013732001 assembled CDS                                       243   1e-64
GSVIVT01013729001 assembled CDS                                       241   3e-64
GSVIVT01020812001 assembled CDS                                        79   3e-15
GSVIVT01015201001 assembled CDS                                        77   8e-15
GSVIVT01026304001 assembled CDS                                        69   3e-12

>GSVIVT01032163001 assembled CDS
          Length = 503

 Score =  438 bits (1126), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 230/310 (74%), Positives = 256/310 (82%), Gaps = 10/310 (3%)

Query: 1   MDSPSRXXXXXXXXXXXXXXXXKVLAENGIEDMVILEASDRIGGRIRKENFGGVSVELGA 60
           MDS +R                KVLAE G+ED+VILEASDRIGGR+RKE+FGGVSVELGA
Sbjct: 1   MDSITRCSVIVVGAGVSGISAAKVLAEKGVEDLVILEASDRIGGRVRKEDFGGVSVELGA 60

Query: 61  GWIAGVGGKESNPVWELANQSGLRTCFSDYSNARYNIYDRSGKIFPSGVAADSYKKAVDS 120
           GW+AGVGGKESNPVWELA +SGLRTCFSDYSNARYNIYDRSGK+FPSGVAADSYKKAV+S
Sbjct: 61  GWVAGVGGKESNPVWELARKSGLRTCFSDYSNARYNIYDRSGKLFPSGVAADSYKKAVES 120

Query: 121 AIMKLRSQEANHA----------CEVIEPPCSPKTPIELAIDFILHDFEMAEVEPISTYV 170
           AI  +R QEANH            ++ E    PKTPIELAIDFILHDFEMAEVEPIST++
Sbjct: 121 AIQMIRHQEANHHGGGGIGGADLSKLSEQLPDPKTPIELAIDFILHDFEMAEVEPISTFL 180

Query: 171 DLGEREFLVADERGYECLLYKMAEDFLFTSEGKILDNRLKLNKVVREIHHSRNGVIVETE 230
           + GERE+LVADERGYE +LYKMAE FLF+SEGKILD+RLKLNKVVRE+ HSRNG++V+TE
Sbjct: 181 EFGEREYLVADERGYEYILYKMAETFLFSSEGKILDSRLKLNKVVRELQHSRNGIMVKTE 240

Query: 231 DGCVYEASYVILSVSIGVLQSDLISFRPPLPKWKTEAIGRCDVMVYTKIFLKFPYKFLAV 290
           DGCVYEA YVILSVSIGVLQSDLI+FRPPLP+WKTEAI +CDVMVYTKIFLKFPYKF   
Sbjct: 241 DGCVYEADYVILSVSIGVLQSDLITFRPPLPRWKTEAIEKCDVMVYTKIFLKFPYKFWPC 300

Query: 291 XSXKGVLIYA 300
              K   IYA
Sbjct: 301 GPGKEFFIYA 310


>GSVIVT01013726001 assembled CDS
          Length = 495

 Score =  253 bits (646), Expect = 8e-68,   Method: Compositional matrix adjust.
 Identities = 134/284 (47%), Positives = 181/284 (63%), Gaps = 19/284 (6%)

Query: 23  KVLAENGIEDMVILEASDRIGGRIRKENFGGVSVELGAGWIAGVGGKESNPVWELANQSG 82
           K L++ GI++++ILEA+DRIGGRI K NF G+SVE+GA W+ GVGG E NP+WE+ N+  
Sbjct: 50  KTLSDAGIKNILILEATDRIGGRIHKTNFAGLSVEMGANWVEGVGGSEMNPIWEMVNKIK 109

Query: 83  LRTCFSDYSNARYNIYDRSGKIFPSGVAA---DSYKKAVD-----SAIMKLRSQEANHAC 134
           L+T FSDY N   N Y + G ++   VA    DS    V+     S ++  + QE     
Sbjct: 110 LKTFFSDYDNVSSNTYKQVGGLYAESVAQHLLDSLDNVVEFSENLSTLLTAKKQEDISVL 169

Query: 135 EVIEPPCS-PKTPIELAIDFILHDFEMAE---------VEPISTYVDLGEREFLVADERG 184
                    P TP+E+AID+  +D+E AE           P+ T+ + GE  + V D RG
Sbjct: 170 TAQRLKNRVPSTPLEMAIDYYNYDYEFAEPPRVTSLQNTAPLPTFANFGEDLYFVGDSRG 229

Query: 185 YECLLYKMAEDFLFTS-EGKILDNRLKLNKVVREIHHSRNGVIVETEDGCVYEASYVILS 243
           YE +++ +A+ FL T+ +G+I D RL LNK V +I +S +GVI++TEDG VY A YV+LS
Sbjct: 230 YESVVHYVAKQFLTTNKDGQITDPRLLLNKAVVQITYSPSGVIIKTEDGSVYRAEYVMLS 289

Query: 244 VSIGVLQSDLISFRPPLPKWKTEAIGRCDVMVYTKIFLKFPYKF 287
            SIGVLQS LI F+P LP WK  AI + D+ VYTKIFLKFPYKF
Sbjct: 290 PSIGVLQSTLIDFKPDLPPWKILAIYQFDMAVYTKIFLKFPYKF 333


>GSVIVT01013732001 assembled CDS
          Length = 489

 Score =  243 bits (619), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 129/286 (45%), Positives = 183/286 (63%), Gaps = 23/286 (8%)

Query: 23  KVLAENGIEDMVILEASDRIGGRIRKENFGGVSVELGAGWIAGVGGKESNPVWELANQSG 82
           K L++ GI+ ++ILEA++RIGGR+ K NF GVSVELGA W++GVGG + NPVW +AN+  
Sbjct: 49  KTLSDAGIKRILILEATNRIGGRMYKANFSGVSVELGANWVSGVGGPQVNPVWIMANKLR 108

Query: 83  LRTCFSDYSNARYNIYDRSGKIFPSGVAADSYKKAVDSAIMKLRSQEANHACEVIEPPCS 142
           L++  S++ N   N Y   G ++   VA  +++  V   +++  ++ +       +P  S
Sbjct: 109 LKSFLSNFLNLSSNTYKPEGGVYEESVARKAFE--VAEQVVEFGTKVSKDLAARKQPDIS 166

Query: 143 -----------PKTPIELAIDFILHDFEMAE---------VEPISTYVDLGEREFLVADE 182
                      PKTP+E+ ID+ L DFE AE          EP STY + GE  + V+D 
Sbjct: 167 ILTSQRLKNYFPKTPLEMVIDYYLCDFESAEPPRATSLLNSEPSSTYSNFGEDSYFVSDP 226

Query: 183 RGYECLLYKMAEDFLFT-SEGKILDNRLKLNKVVREIHHSRNGVIVETEDGCVYEASYVI 241
           RGYE +++ +A+ FL T + G+I D RL+L KVV EI  S  GV V+TEDG V+ A YVI
Sbjct: 227 RGYESVVHYVAQQFLTTNAAGQITDPRLQLKKVVTEISRSPRGVAVKTEDGLVHRADYVI 286

Query: 242 LSVSIGVLQSDLISFRPPLPKWKTEAIGRCDVMVYTKIFLKFPYKF 287
           +SVS+GVLQ+DLI F P LP+WK  A+ + ++ +YTKIFLKFPYKF
Sbjct: 287 VSVSLGVLQNDLIKFHPSLPQWKILALDQFNMAIYTKIFLKFPYKF 332


>GSVIVT01013729001 assembled CDS
          Length = 505

 Score =  241 bits (615), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 128/282 (45%), Positives = 180/282 (63%), Gaps = 19/282 (6%)

Query: 25  LAENGIEDMVILEASDRIGGRIRKENFGGVSVELGAGWIAGVGGKESNPVWELANQSGLR 84
           L+E GIE+++ILEA++RIGGRI+K NF G+SVE+GA W+ GVGG   NP+W++ N+  L 
Sbjct: 62  LSEAGIENILILEATNRIGGRIQKMNFAGLSVEIGASWVEGVGGPRLNPIWDMVNRLKLT 121

Query: 85  TCFSDYSNARYNIYDRSGKIFPSGVAADSYKKA--VDSAIMKLRSQEANHACEVIEPPCS 142
           T +S+Y N   N Y + G ++    A +++  A  +   I  +      H  + I    S
Sbjct: 122 TFYSNYDNISSNAYKQKGGLYEKSEAQNAFYAAQELSEFIKNVSKYLKAHRQDDISILAS 181

Query: 143 -------PKTPIELAIDFILHDFEMAEVE---------PISTYVDLGEREFLVADERGYE 186
                  P TP+++AID+I +D+E +E           P+ T+   GE  + VAD +GYE
Sbjct: 182 QRLKNQVPSTPLDMAIDYIAYDYEFSEPPRVTSLKNSIPLHTFSKFGEDAYFVADPKGYE 241

Query: 187 CLLYKMAEDFLFTSE-GKILDNRLKLNKVVREIHHSRNGVIVETEDGCVYEASYVILSVS 245
            ++Y +A+ FL T+E G+I D RL  NKVV EI +++NGV V+TEDG VY A YV++S S
Sbjct: 242 SVVYFVAKQFLTTNESGEITDPRLLFNKVVNEISYTKNGVTVKTEDGSVYRAEYVMVSAS 301

Query: 246 IGVLQSDLISFRPPLPKWKTEAIGRCDVMVYTKIFLKFPYKF 287
           IGVLQS LI+F+P LP WK  AI + D+ VYTKIFLKFP KF
Sbjct: 302 IGVLQSGLINFKPDLPPWKILAIYQFDMAVYTKIFLKFPDKF 343


>GSVIVT01020812001 assembled CDS
          Length = 490

 Score = 78.6 bits (192), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 85/285 (29%), Positives = 124/285 (43%), Gaps = 49/285 (17%)

Query: 33  MVILEASDRIGGRIRKENFGGVSVELGAGWIAGVGGKESNPVWELANQSGL--------R 84
           +V+LE+ DRIGGR+  +   G  V+LGA W+ GV   + NP+  L ++ GL         
Sbjct: 53  VVLLESRDRIGGRVHTDYSFGFPVDLGASWLHGVC--KENPLAPLISRLGLPLYRTSGDN 110

Query: 85  TCFSDYSNARYNIYDRSGKIFPS------GVAADSYKKAVDSAIMKLRSQEANHACEVIE 138
           +   D+    Y ++D  G   P       GVA +   +  D    K+R QE +    +++
Sbjct: 111 SVLYDHDLESYALFDMDGNQVPQELVREIGVAFEKILEETD----KVR-QEHSEDMPILD 165

Query: 139 ---------PPCSPKTPIELAIDFILHDFE---MAEVEPISTYVDLGEREFLVADE---- 182
                    P    +      + + L   E    A+ + IS      + E L        
Sbjct: 166 AFKIVFERRPDLRLEGLAHKVLQWYLCRMEGWFAADADNISLK-SWDQEELLPGGHGLMV 224

Query: 183 RGYECLLYKMAEDFLFTSEGKILDNRLKLNKVVREIHHSRNGVIVETEDGCVYEASYVIL 242
           RGY  ++  +A         K LD  + LN  V +I    NGV V  EDG  + A   I+
Sbjct: 225 RGYIPVINTLA---------KGLD--IHLNHRVTKIVRRYNGVKVTVEDGRSFVADAAIV 273

Query: 243 SVSIGVLQSDLISFRPPLPKWKTEAIGRCDVMVYTKIFLKFPYKF 287
           +V IGVL+S  I F P LP+WK EAI    V +  KI L F   F
Sbjct: 274 AVPIGVLKSSRIKFEPRLPEWKEEAIADIGVGIENKIALHFDKVF 318


>GSVIVT01015201001 assembled CDS
          Length = 474

 Score = 77.4 bits (189), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 74/287 (25%), Positives = 127/287 (44%), Gaps = 49/287 (17%)

Query: 23  KVLAENGIEDM---VILEASDRIGGRIRKENFGGVSVELGAGWIAGVGGKESNPVWELAN 79
           K+    G +D+    ++E   RIGGRI    FGG  +E+GA WI G+ G   +P+ ++A 
Sbjct: 23  KLYTSTGFKDLFELCVVEGGTRIGGRINTSQFGGDRIEMGATWIHGIVG---SPIHKMAQ 79

Query: 80  Q-SGLRT-----CFSDYSNARYNIYDRSGKIFPSGVAADS--YKKAVDSAIMKLRSQEAN 131
           +   L +     C   Y ++   + +   ++ PS V   S  +KK +D +  KL      
Sbjct: 80  ELHSLESDQPWECMDGYLDSPTTMAEGGFELGPSTVDPVSTLFKKLMDFSQGKL------ 133

Query: 132 HACEVIEPPCSPKTPIELAIDFILH-----------DFEMAEVEPISTYVDLGEREFLVA 180
               + +  CS +  +     F +H           D    + +  S Y+     E  +A
Sbjct: 134 ----IEDSVCSEELSLLEEAIFAMHESTQRTYTSAGDLSTLDYDAESEYIMFPGEEVTIA 189

Query: 181 DERGYECLLYKMAEDFLFTSEGKILDNRLKLNKVVREIHHSRNGVIVETEDGCVYEASYV 240
             +GY  ++  +A          +    ++L + V +I      V +   DG    A +V
Sbjct: 190 --KGYLSIIEALAS--------VLPAGLIQLGREVTKIEWQPEPVKLHFCDGSTMSADHV 239

Query: 241 ILSVSIGVLQSDLIS----FRPPLPKWKTEAIGRCDVMVYTKIFLKF 283
           I++VS+GVL++ +      F PPLP +KTEAI R    V  K+F++ 
Sbjct: 240 IVTVSLGVLKAGICGDSGLFNPPLPSFKTEAISRLGYGVVNKLFVQL 286


>GSVIVT01026304001 assembled CDS
          Length = 490

 Score = 68.9 bits (167), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 70/289 (24%), Positives = 125/289 (43%), Gaps = 53/289 (18%)

Query: 27  ENGIEDMVILEASDRIGGRIRKENFGGVSVELGAGWIAGVGGKESNPVWELANQSGLR-- 84
            N    +V+LE+ DR+GGRI  +   G  V++GA W+ G   +  NP+  L  + GL   
Sbjct: 45  HNASFQVVLLESRDRLGGRIHTDYSLGCPVDMGASWLHGACNE--NPLAPLICRLGLTLY 102

Query: 85  ------TCFSDYSNARYNIYDRSGKIFPSGVA---ADSYKKAV------------DSAIM 123
                 +   D+      ++D  G   P  +     +++KK +            D +++
Sbjct: 103 RTSGDDSVLYDHDLESCTLFDMDGHQVPQKMVVEVGETFKKILKETENVRIEHCDDMSVL 162

Query: 124 KLRS---------QEANHACEVIEPPCSPKTPIELAIDFILHDFEMAEVEPISTYVDLGE 174
           +  S         ++   A EV++     +     A+D  +   +  + E I +    G 
Sbjct: 163 QAISIVLDRHPELRQEGLANEVLQWYIC-RMEAWFAVDADMISLKSWDQEHILS----GG 217

Query: 175 REFLVADERGYECLLYKMAEDFLFTSEGKILDNRLKLNKVVREIHHSRNGVIVETEDGCV 234
              +V   +GY+ ++  +++D             ++LN  V  I +    V+V  E G  
Sbjct: 218 HGLMV---QGYDPIIKTLSKDL-----------DIRLNHRVTNISYGCKKVVVTVEGGRN 263

Query: 235 YEASYVILSVSIGVLQSDLISFRPPLPKWKTEAIGRCDVMVYTKIFLKF 283
           + A   I++V IG+L+++LI F+P LP WK  AI    V    KI L+F
Sbjct: 264 FVADAAIITVPIGILKANLIEFKPKLPDWKVNAISDIGVGNENKIALRF 312