Jatropha Genome Database

JcCA0314181.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0314181.20 - phase: 0 /partial
         (392 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01029073001 assembled CDS                                       620   e-178

>GSVIVT01029073001 assembled CDS
          Length = 526

 Score =  620 bits (1599), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 307/392 (78%), Positives = 330/392 (84%)

Query: 1   VYGEYVNGSISDEGRKNVVRNSCPGAGACGGMYTANTMASAIEAMGMSLPYSSSIPAESP 60
           VYGE+V+GSI+DE R NVVRNSCPGAGACGGMYTANTMASAIE MGMSLP+SSS PAE P
Sbjct: 135 VYGEFVSGSITDEQRMNVVRNSCPGAGACGGMYTANTMASAIEVMGMSLPFSSSTPAEDP 194

Query: 61  LKLDECRLAGKYLLELLKMDLKPRDIITRQSLRNAMVIVMALGGSTNAVLHLIAIARSVG 120
           LKL EC LAGKYLL+L+KMDLKPRDIIT +SLRNAMV+VMALGGSTNAVLHLIAIARSVG
Sbjct: 195 LKLHECHLAGKYLLDLIKMDLKPRDIITMKSLRNAMVVVMALGGSTNAVLHLIAIARSVG 254

Query: 121 LELKLDDFQKVSDEVPFLADLKPSGKYVMEDVHKIGGTPAVLRYLLERGFLDGDCLTVTG 180
           L+L LDDFQKVSDEVPFLADLKPSGKYVMED+HKIGGTPA++R+LLE GFLDGDC+TVTG
Sbjct: 255 LQLTLDDFQKVSDEVPFLADLKPSGKYVMEDIHKIGGTPAIIRFLLENGFLDGDCITVTG 314

Query: 181 KTLAENVQNCPPLSEGQDIIRSLENPIKKTGHIQILRGNLAPEGSVAKITGKEGLYFSGP 240
           KTLAEN +  P L   Q IIR L NPIKKTGH+Q L GNLAPEGSVAKITGKEGLYFSGP
Sbjct: 315 KTLAENAELFPSLPRDQQIIRPLANPIKKTGHLQTLYGNLAPEGSVAKITGKEGLYFSGP 374

Query: 241 ALVFEGEEAMIRAITENPKNFKGKVVVIRXXXXXXXXXXXXXLTPTSAIMGAGLGKDCAL 300
           ALVFEGEEAMI AI ENP +FKGKVV+IR             LTPTSAIMGAGLGKD AL
Sbjct: 375 ALVFEGEEAMIAAIAENPMSFKGKVVIIRGEGPKGGPGMPEMLTPTSAIMGAGLGKDVAL 434

Query: 301 LTDGRXXXXXXXXXXXXXCPEAQEGGPIGLLRNGDTIKIDVQERRIDVELTDKEMEERRK 360
           LTDGR             CPEA EGGPIGL+ NGD I IDVQ+RR+DV+LTD+EM ERRK
Sbjct: 435 LTDGRFSGGSHGYVVGHICPEAHEGGPIGLIENGDIITIDVQKRRMDVQLTDEEMNERRK 494

Query: 361 NWSPPPYKATCGVLYKYIKNVCSASRGCVTDE 392
            WSPPPYKA  GVLYKYIKNV SAS GCVTDE
Sbjct: 495 KWSPPPYKANQGVLYKYIKNVKSASDGCVTDE 526