Jatropha Genome Database

JcCA0314181.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0314181.10 - phase: 0 /partial
         (554 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01029065001 assembled CDS                                       223   1e-58
GSVIVT01029064001 assembled CDS                                        77   3e-14

>GSVIVT01029065001 assembled CDS
          Length = 487

 Score =  223 bits (569), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 160/380 (42%), Positives = 217/380 (57%), Gaps = 24/380 (6%)

Query: 1   MEEMDIEQVVDVPDTPDRIIAHAQLGR-----ESNSSAAAHSRTSDFRDKECLNKLGVSS 55
           ME+MDI+QV+DVPDTPDR       GR     +S+S A+AHS  S  +DK  LN+L    
Sbjct: 49  MEDMDIDQVMDVPDTPDRSAERNIDGRKCDKHDSSSLASAHSGNS--KDKGVLNQLRGRG 106

Query: 56  RLVGESGHDRRLRLNRQGVPVNMDELKPRNKSIAFSPSENFYPSKNIPLFRRGAMVNDSK 115
           RLV E+GH RRL    +    N  E +  +KS+  S  EN    K+  LFRR      SK
Sbjct: 107 RLVTENGHSRRLHFRSRESSANSGETECCSKSMV-SQLENSSAPKSAHLFRRMRSDGISK 165

Query: 116 PET-HNIGMRSRDKGKAEHIKMPSKQPLYLEKDALFDMAFPRSASKSLQAQETRDVQISS 174
            E  H+IG +  +KGKA     PSK       +   D+  P  A K L  +E     +++
Sbjct: 166 HEAKHSIGPQHTNKGKAFCNGFPSKSSACQNDNKFLDLIGPNGAFKDLLDEEIGKGSMAT 225

Query: 175 NGESSLHF---SRMTSSNSLKGKEKIGVSSCNGSGSAINHGKEVDLNSVSQPKVEKQMSA 231
           NG SSLH    S   S N+ KGKEK    +C+GSGS I   +  D++   QP+ EK +S+
Sbjct: 226 NGCSSLHCIENSPKPSCNTWKGKEKTDNGACDGSGSGIGFREAFDISIDIQPRSEKHVSS 285

Query: 232 SHLAVTSPRVTGQKRLVRNGCISPHNIASRAQRLAERLRVGSADIGKYHSSNMVSDGPPT 291
           S   +TSPRV+GQKRLVRNGCISPHNI +RA++LAE+    S D+ +  + +++S   P+
Sbjct: 286 SLQYITSPRVSGQKRLVRNGCISPHNIIARAKQLAEQQSSSSKDVEQNDAKDILSRASPS 345

Query: 292 -VDIKEVVAEENNCHRAKGKGLVLHSSKSKEHDAKVANVSTSSGPNNKAPNES----RDA 346
            +DIK+ +AE NN  R KGK ++ H   SK+HD     V+ S   +N+  N++    RDA
Sbjct: 346 RMDIKDPIAEINNSSRVKGKSIISHPCTSKQHD--FGTVTRSPIVHNEQANDNSDTGRDA 403

Query: 347 L-----LGGWRSTRNRGKKM 361
                 L GWRSTRNR KK+
Sbjct: 404 FGCFEGLSGWRSTRNRSKKV 423


>GSVIVT01029064001 assembled CDS
          Length = 96

 Score = 76.6 bits (187), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 40/61 (65%), Positives = 52/61 (85%), Gaps = 2/61 (3%)

Query: 475 LDPIYEIDDESFTEMRNGNSQGLGSVN-DDSDARARQVEADEMLARELQEQLYHEVPVFG 533
           ++P+ EID++S  E+R+  S+  GS+N DDSDARARQ+EADE+LARELQEQLYHE+PV G
Sbjct: 1   MEPVIEIDEQS-PEIRHVASRNGGSMNNDDSDARARQIEADEILARELQEQLYHEMPVDG 59

Query: 534 G 534
           G
Sbjct: 60  G 60