Jatropha Genome Database

JcCA0314171.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0314171.20 + phase: 0 
         (306 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01011051001 assembled CDS                                       371   e-103
GSVIVT01025351001 assembled CDS                                        97   8e-21
GSVIVT01022768001 assembled CDS                                        81   7e-16

>GSVIVT01011051001 assembled CDS
          Length = 290

 Score =  371 bits (953), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 182/293 (62%), Positives = 229/293 (78%), Gaps = 4/293 (1%)

Query: 1   MIFAAAHSSFGFARIWPTNRYRPHSSEVVMLNQVPNQSASDFTSITRQHGKKCELFDLCK 60
           MI +  HS FG + + P++  RP++  +  +    +Q++    S+T +  + CE FDL  
Sbjct: 1   MILSTTHS-FG-SILTPSHSTRPYTPHLNAVLSKLSQASQFSISVTYKEKRLCECFDLYN 58

Query: 61  TLVPYGDAWNWQKDIVKEKKAMIERNEEFPDTLIVLQHRPVYTLGTGSSVGYLNFDVKDA 120
            LVPYG+AW+WQK IVKEKKA+I+RN+   D LI+LQH PV+TLGTGSS  Y+NF++ DA
Sbjct: 59  ELVPYGEAWSWQKSIVKEKKALIQRNQNCSDALIILQHPPVFTLGTGSSEEYMNFEIIDA 118

Query: 121 PFEVYRTERGGEVTYHGPGQLVMYPIINLRNHEMDLHWYLRALEEVVIRVLASTFSIEAS 180
           P++VYRTERGGEVTYHGPGQLVMYPIINLRNH+MDLHWYLRALEEVVIRVL++TFSI+AS
Sbjct: 119 PYDVYRTERGGEVTYHGPGQLVMYPIINLRNHKMDLHWYLRALEEVVIRVLSTTFSIKAS 178

Query: 181 RVEGLTGVWVGDEKVAAIGIKVSQWITYHGLALNVTTDLTPFNWIVPCGIRNRKVGSIKG 240
           R+EG TGVWVGD+K+AAIGI+VSQWI YHGLALNVTTDLTPF  IVPCGIRNRK+GSIKG
Sbjct: 179 RLEGFTGVWVGDQKLAAIGIRVSQWIAYHGLALNVTTDLTPFQLIVPCGIRNRKIGSIKG 238

Query: 241 LLLQQIDSCLYENGDDPEFVDS-HLIDTTYKSLVREFSDIFQLNIYHKTVSSL 292
            +L +  S       D  ++D   LID T+KSL++EFS++FQL +  K +S L
Sbjct: 239 -ILGEFGSSNRCGASDINYIDDFQLIDITHKSLIKEFSEVFQLELALKPISML 290


>GSVIVT01025351001 assembled CDS
          Length = 274

 Score = 97.4 bits (241), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 59/180 (32%), Positives = 89/180 (49%), Gaps = 41/180 (22%)

Query: 63  VPYGDAWNWQKDIVKEKKAMIERNEEFPDTLIVLQHRPVYTLG---TGSSVGYLNFDVKD 119
           V Y DA   Q  ++  +K       +  DT++ LQH P YTLG   T  ++     D+K 
Sbjct: 87  VNYLDALKLQDKLISRRK-----THKISDTVLSLQHPPTYTLGKRRTDHNLLVPESDLKT 141

Query: 120 APFEVYRTERGGEVTYHGPGQLVMYPIINLRNHEMDLHWYLRALEEVVIRVLASTFSIEA 179
              E++ T+RGG++T+HGP Q ++YPII+LR+  +    Y                    
Sbjct: 142 IGAELHYTQRGGDITFHGPHQAILYPIISLRDIGLGARNY-------------------- 181

Query: 180 SRVEGLTGVWVGDEKVAAIGIKVSQWITYHGLALNVTTDLTPFNWIVPCGIRNRKVGSIK 239
                         K+ AIG+++S  IT HGLA N+  DL  F  IVPCGI +++V S++
Sbjct: 182 -------------RKIGAIGVRISSGITSHGLAFNIDPDLNYFKHIVPCGIADKEVTSLR 228


>GSVIVT01022768001 assembled CDS
          Length = 282

 Score = 80.9 bits (198), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 41/79 (51%), Positives = 53/79 (67%), Gaps = 3/79 (3%)

Query: 201 KVSQWITYHGLALNVTTDLTPFNWIVPCGIRNRKVGSIKGLLLQQIDSCLYENGDDPEFV 260
           +VSQWI YHGLALNVTT+LT F  IVPC IRNR+VG IKG +L +  S       D  ++
Sbjct: 100 RVSQWIAYHGLALNVTTNLTLFQLIVPCCIRNREVGRIKG-ILGEFGSSNRRGASDINYI 158

Query: 261 DSHLIDTTYKSLVREFSDI 279
           D      T+KSL++EF ++
Sbjct: 159 DD--FQLTHKSLIKEFYEV 175