Jatropha Genome Database

JcCA0314071.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0314071.20 - phase: 1 /pseudo/partial
         (169 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01008051001 assembled CDS                                       196   5e-51

>GSVIVT01008051001 assembled CDS
          Length = 698

 Score =  196 bits (498), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 106/151 (70%), Positives = 116/151 (76%), Gaps = 5/151 (3%)

Query: 20  KDGKRWGVEEDHPTQGVKELGKSKWSNDLDEDDIEGSERMKGNLNALSGLIQAYGKQGKS 79
           KDGKRW  E DHP + VKELG SKWSNDLDEDD E S   K NLNALSGLIQAY K GKS
Sbjct: 550 KDGKRWDAEGDHPAE-VKELGSSKWSNDLDEDDTEKSRGPKENLNALSGLIQAYSKGGKS 608

Query: 80  VRWSDQVGNTGFSIGAAKKAQMLSLVIGPGAGYNLKSNPLPEDEAITTA--KAESRRQSA 137
           V W DQ GNTGFSIG AKKA   SLVIGPGAGYNLKSNPL E+E  T++     S+R S 
Sbjct: 609 VHWGDQAGNTGFSIGTAKKAN--SLVIGPGAGYNLKSNPLREEENSTSSGNTGGSKRTSM 666

Query: 138 FQERLRAEHESFKAVFDKRKRRIGRLDLEEE 168
           FQE+LRAE ESF+AVFD+R+ RIG LD +EE
Sbjct: 667 FQEQLRAERESFRAVFDRRRHRIGGLDADEE 697