Jatropha Genome Database

JcCA0314071.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0314071.10 - phase: 0 
         (547 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01008052001 assembled CDS                                       744   0.0  
GSVIVT01010143001 assembled CDS                                        79   7e-15
GSVIVT01016291001 assembled CDS                                        67   2e-11
GSVIVT01024770001 assembled CDS                                        61   2e-09
GSVIVT01016290001 assembled CDS                                        60   3e-09
GSVIVT01032851001 assembled CDS                                        53   3e-07

>GSVIVT01008052001 assembled CDS
          Length = 511

 Score =  744 bits (1922), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/505 (73%), Positives = 425/505 (84%), Gaps = 9/505 (1%)

Query: 40  RGDPKLPIGTMETKTFPAVASPGLALDSLNFAISDLKSNPPLFTSGIIRLQVPIQQRIEA 99
           +GDPK+PIGT++T+TFP V++  LALD+L+ AIS LKS+PP FTSGI+RLQVPIQQ+IEA
Sbjct: 5   QGDPKIPIGTIQTRTFPGVSTHSLALDTLSSAISHLKSDPPPFTSGILRLQVPIQQKIEA 64

Query: 100 IDWLHAQHHLLPRCFFSGRSRRK--DEF-HLCXXXXXXXXXXXLVSVAGVGSAVLFRHIH 156
           IDWLHAQ  LLPRCFFS RS+    D F               LV VAG+G+AV FRHIH
Sbjct: 65  IDWLHAQQELLPRCFFSSRSQSSSFDPFIDSVNGDGNGLEDHDLVRVAGIGAAVFFRHIH 124

Query: 157 PFSYNDWKSIKRFLSAKCPLIRAYGAIRFDARANISSEWEAFGSFYFIVPHVEFDEFEGS 216
           PFS +DWKSIKRFLS KCPLIRAYGAIRFD RAN+SSEW AFGSFYF+VP VEF+E EGS
Sbjct: 125 PFSLDDWKSIKRFLSKKCPLIRAYGAIRFDPRANVSSEWRAFGSFYFVVPQVEFNELEGS 184

Query: 217 SMLAATIAWDNALSWTWGQAIDALRLTMTQVSSVIVKLQKEVAGTFILSNNHIPNKTYWD 276
           S+LA TIAWDNALSWTW +AI AL+ TM QVSS++ KL+KEV  TF+LSN+H+P+K  W+
Sbjct: 185 SVLATTIAWDNALSWTWEKAIGALQATMCQVSSIVGKLRKEVCKTFVLSNSHVPSKASWN 244

Query: 277 RAVKRALQIISRSSSPLIKVVLARSSKVVTATDIDPITWLACLQVEGENAYQFCLQPPNS 336
            AV RALQII R+ SPLIKVVLARSS+VVT + IDPI WLACLQVEG+NAYQF LQPP++
Sbjct: 245 LAVNRALQIIGRADSPLIKVVLARSSRVVTTSHIDPIAWLACLQVEGQNAYQFFLQPPDA 304

Query: 337 PAFIGNTPEQLFHRKRLEVSSEALAGTRARGESKALDLQIELDLLSSRKDHLEFTIVRDS 396
           PAFIGNTPEQLFHRKRL + SEALAGTRARG SKA DLQIELDLLSS K+  EF+IVR+S
Sbjct: 305 PAFIGNTPEQLFHRKRLCIHSEALAGTRARGGSKAQDLQIELDLLSSPKEDFEFSIVRES 364

Query: 397 ------AVCNKVLVQPNIVIRKFPRVQHLYAQLAGKLRSEDDEFDILSSLHPTPAVCGFP 450
                 A+C+ V V+P   IRK PR+QHLYAQL+G+LRSEDDEFDILSSLHPTPAVCGFP
Sbjct: 365 IQRKLEAICSTVWVEPKKAIRKLPRIQHLYAQLSGRLRSEDDEFDILSSLHPTPAVCGFP 424

Query: 451 TEEARVLIAETEVFDRGMYAGPVGWFGGGESEFAVGIRSALVEKGLGAMIYAGTGIVEGS 510
            EEAR+LIAETE+FDRGM+AGPVGWFGGGE+EFAVGIRSALVEKGLG +IYAGTGIV GS
Sbjct: 425 REEARLLIAETEMFDRGMFAGPVGWFGGGETEFAVGIRSALVEKGLGGLIYAGTGIVRGS 484

Query: 511 NPSLEWDELELKTSQFTKLLKLEVP 535
           N SLEW+ELELK SQFTK +K+EVP
Sbjct: 485 NSSLEWEELELKISQFTKPIKVEVP 509


>GSVIVT01010143001 assembled CDS
          Length = 262

 Score = 78.6 bits (192), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 62/224 (27%), Positives = 98/224 (43%), Gaps = 22/224 (9%)

Query: 60  SPGL----ALDSLNFAISDLKSNPPLFTSGIIRLQ-------VPIQQRIEAIDWLHAQ-- 106
           SP L     L+ +  A+ +LK NPP   SG+ R Q       V +    +A++W  +Q  
Sbjct: 28  SPALTLKQGLEKIKDAVEELKLNPPCSRSGLYRFQARFTLLFVAVPPSAKAMNWFFSQPL 87

Query: 107 -HHLLPRCFFSGRSRRKDEFHLCXXXXXXXXXXXLVSVAGVGSAVLFRHIHPFSYNDWKS 165
              + P  F S  +                       V G+G+AV F      +     S
Sbjct: 88  SSAVFPLFFLSKETEN--------LIFKSLSLGGTCGVFGIGAAVRFTCPSFSTLGGQNS 139

Query: 166 IKRFLSAKCPLIRAYGAIRFDARANISSEWEAFGSFYFIVPHVEFDEFEGSSMLAATIAW 225
            KR+LS     + AYG +  +     SS     GSFY  +P +E DE EG S+L+AT+AW
Sbjct: 140 FKRYLSIDSTCVTAYGFMNANFNEESSSMRHEAGSFYIFIPQIELDEDEGISILSATLAW 199

Query: 226 DNALSWTWGQAIDALRLTMTQVSSVIVKLQKEVAGTFILSNNHI 269
            ++   T+ ++I +  L++ Q   +  KL K++     +   HI
Sbjct: 200 SDSPLSTFEESIHSYELSLYQRKLIRRKLFKDIRNVESIGKAHI 243


>GSVIVT01016291001 assembled CDS
          Length = 853

 Score = 67.4 bits (163), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/222 (25%), Positives = 99/222 (44%), Gaps = 20/222 (9%)

Query: 311 DPITWLACLQVEGENAYQFCLQPPNSPAFIGNTPEQLFHRKRLEVSSEALAGTRARGESK 370
           +P  + A L    EN    C  P       GN            + ++ + GT ARG +K
Sbjct: 623 NPAPYAAWLNFSKENLCICCSSPERFLQLDGNGI----------LEAKPIKGTIARGLTK 672

Query: 371 ALDLQIELDLLSSRKDHLEFTIVRD------SAVC--NKVLVQPNIVIRKFPRVQHLYAQ 422
             D  ++L L  S KD  E  ++ D        VC    + V   + +  +  V  + + 
Sbjct: 673 EEDEHLKLQLQYSEKDQAENLMIVDLLRNDLGRVCEPGSIHVPCLMDVESYATVHTMVST 732

Query: 423 LAGKLRSEDDEFDILSSLHPTPAVCGFPTEEARVLIAETEVFDRGMYAGPVGWFGGGES- 481
           + GK +S+    D + +  P  ++ G P   +  L+   E   RG+Y+G +G+F   ++ 
Sbjct: 733 IRGKKQSKMSPVDCVRAAFPGGSMTGAPKLRSMELLDSIETSSRGIYSGSIGFFSYNQTF 792

Query: 482 EFAVGIRSALVEKGLGAMIYAGTGIVEGSNPSLEWDELELKT 523
           +  + IR+ ++ +G  A +  G  IV  SNP  E++E+ LKT
Sbjct: 793 DLNIVIRTIVIHEG-EASVGGGGAIVALSNPESEYEEMILKT 833


>GSVIVT01024770001 assembled CDS
          Length = 589

 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 61/231 (26%), Positives = 102/231 (44%), Gaps = 12/231 (5%)

Query: 311 DPITWLACLQVEGENAYQFCLQPPNSPAFIGNTPEQLFHRKRLEVSSEALAGTRARGESK 370
           DP      L++   + Y   LQ       + ++PE L   K+  + +  LAGT  RG++ 
Sbjct: 354 DPFEVYRALRIVNPSPYMTYLQARGC-ILVASSPEILTRVKKNRIINRPLAGTVRRGKTP 412

Query: 371 ALDLQIELDLLSSRKDHLEFTIVRDSAVCN--------KVLVQPNIVIRKFPRVQHLYAQ 422
             D+ +E  L +  K   E  ++ D    +         V V+  + I ++  V H+ + 
Sbjct: 413 KEDIMLENQLRNDEKQCAEHIMLVDLGRNDVGKVSKPGSVTVEKLMNIERYSHVMHISST 472

Query: 423 LAGKLRSEDDEFDILSSLHPTPAVCGFPTEEARVLIAETEVFDRGMY-AGPVGWFGGGES 481
           + G+L      +D L +  P   V G P  +A  LI + EV  RG Y  G  G    G+ 
Sbjct: 473 VTGELLDHLTSWDALRAALPVGTVSGAPKVKAMELIDQLEVTRRGPYSGGFGGISFSGDM 532

Query: 482 EFAVGIRSALVEKGLGAMIYAGTGIVEGSNPSLEWDELELKTSQFTKLLKL 532
           + A+ +R+  + +   A + AG GIV  S P+ E  E E K +   + + L
Sbjct: 533 DIALALRT--IRREWVAHLQAGAGIVADSVPADEQRECENKAAALARAIDL 581


>GSVIVT01016290001 assembled CDS
          Length = 827

 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 47/178 (26%), Positives = 86/178 (48%), Gaps = 10/178 (5%)

Query: 355 VSSEALAGTRARGESKALDLQIELDLLSSRKDHLEFTIVRD------SAVC--NKVLVQP 406
           + ++ + GT  RG +K  D Q++  L  S KD  E  ++ D        VC    V V  
Sbjct: 622 LEAKPIKGTVPRGSAKEADEQLKQKLQCSEKDQAENLMIVDLLRNNLGRVCEVGSVHVPL 681

Query: 407 NIVIRKFPRVQHLYAQLAGKLRSEDDEFDILSSLHPTPAVCGFPTEEARVLIAETEVFDR 466
            + +  +  V  + + + GK  S     D + +  P  ++ G P   +  L+   E   R
Sbjct: 682 LMDVESYTTVHTMVSTIRGKKDSTMSPVDCVRAAFPGGSMTGAPKLRSMELLDSIESSSR 741

Query: 467 GMYAGPVGWFGGGES-EFAVGIRSALVEKGLGAMIYAGTGIVEGSNPSLEWDELELKT 523
           G+Y+G +G+F   ++ +  + IR+ ++ +G  A + AG  I+  S+P+ E +E+ LKT
Sbjct: 742 GIYSGSIGFFSYNQTFDLNIVIRTVVIHEG-EASVGAGGAIIALSDPAGEHEEMILKT 798


>GSVIVT01032851001 assembled CDS
          Length = 590

 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 51/195 (26%), Positives = 84/195 (43%), Gaps = 22/195 (11%)

Query: 310 IDPITWLACLQVEGENAYQFCLQPPNSPAFIGNTPEQLFHRKRLEVSSEALAGTRARGES 369
           ++P  ++A LQ  G      C+        + ++PE L H K+  + +  LAGT  RG +
Sbjct: 334 VNPSPFMAYLQARG------CV-------LVASSPEILTHVKKNNIVNRPLAGTVRRGTT 380

Query: 370 KALDLQIELDLLSSRKDHLEFTIVRDSAVCN--------KVLVQPNIVIRKFPRVQHLYA 421
              D  +E  LL+  K   E  ++ D    N         + V+    +  F  V H+ +
Sbjct: 381 IHEDEMLEGQLLNDEKQCAEHIMLVDLGRNNVGKVAKFGSLKVEDLKAVECFSHVMHISS 440

Query: 422 QLAGKLRSEDDEFDILSSLHPTPAVCGFPTEEARVLIAETEVFDRGMYAGPVGWFG-GGE 480
            + G+L+     ++ L S+    AV G P  +A  LI E E   RG Y G  G     G+
Sbjct: 441 TVTGELQDHLTSWNALRSILHVGAVSGAPKVKAMELIDEWEESRRGPYGGGFGNVSFTGD 500

Query: 481 SEFAVGIRSALVEKG 495
            E  + +R+ +   G
Sbjct: 501 MEIDLTLRTIVFPTG 515