Jatropha Genome Database

JcCA0313951.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0313951.20 + phase: 0 /pseudo
         (171 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01008947001 assembled CDS                                       248   1e-66
GSVIVT01037118001 assembled CDS                                       177   3e-45

>GSVIVT01008947001 assembled CDS
          Length = 301

 Score =  248 bits (633), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 119/150 (79%), Positives = 133/150 (88%), Gaps = 6/150 (4%)

Query: 1   MESADVF------LGLHDFLERMRQPSAADFVKSIKSFIVSFSNNAPDPERDSALVQDFL 54
           ME+AD F      L  HDFLERMRQPSAADFVK+IKSFIVSFSNNAPDPERDSA VQ+FL
Sbjct: 1   MENADPFASSTAPLTWHDFLERMRQPSAADFVKAIKSFIVSFSNNAPDPERDSAAVQEFL 60

Query: 55  AKMEAAFRAHPLWAGCSDEELESAGEGLEKYVMTKLFTRVFASIPDDVKVDEQLSEKMSL 114
           A ME AFRAHPLWAGCS+EELESAGEGLEKYVMTKL+TRVFAS+PDD K+DEQL EK+ L
Sbjct: 61  ANMEMAFRAHPLWAGCSEEELESAGEGLEKYVMTKLYTRVFASVPDDSKLDEQLFEKIGL 120

Query: 115 IQQFIRPENLDIKPTFQNETSWLVSRKDIQ 144
           +QQFIRPE LDIK TFQNETSWL+++K++Q
Sbjct: 121 VQQFIRPEQLDIKTTFQNETSWLLAQKELQ 150


>GSVIVT01037118001 assembled CDS
          Length = 245

 Score =  177 bits (448), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 81/137 (59%), Positives = 106/137 (77%)

Query: 8   LGLHDFLERMRQPSAADFVKSIKSFIVSFSNNAPDPERDSALVQDFLAKMEAAFRAHPLW 67
           L  +DFL+RMR P++ D V+SIKSFIVSFS  AP PE D   +QDFL  ME + R HPLW
Sbjct: 9   LTFYDFLDRMRNPASLDLVRSIKSFIVSFSFYAPSPENDGKRLQDFLLTMEDSIRDHPLW 68

Query: 68  AGCSDEELESAGEGLEKYVMTKLFTRVFASIPDDVKVDEQLSEKMSLIQQFIRPENLDIK 127
            G ++EE++SA EGLEKYVMTKLF+R FA+ P+D K D+++SEK+SL+Q F+RPE+LDI 
Sbjct: 69  VGATEEEIDSAIEGLEKYVMTKLFSRTFAASPEDAKADQEISEKISLLQNFLRPEHLDIP 128

Query: 128 PTFQNETSWLVSRKDIQ 144
              QNE SWL++ K++Q
Sbjct: 129 AVLQNEASWLLAEKELQ 145