Jatropha Genome Database

JcCA0313841.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0313841.10 + phase: 2 /partial
         (269 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01007735001 assembled CDS                                       475   e-134
GSVIVT01023862001 assembled CDS                                       162   1e-40

>GSVIVT01007735001 assembled CDS
          Length = 988

 Score =  475 bits (1222), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 230/268 (85%), Positives = 241/268 (89%)

Query: 1   ENEASLAVLPDLLTELDGMTEETRLLMLIEGVLAANIFDWGSRACVDLYHKGTIIEIYRM 60
           ENEASLAVLPDLL E+D M EETRLL LIEGVLAANIFDWGSRACVDLYHKGTIIEIYRM
Sbjct: 720 ENEASLAVLPDLLMEIDSMNEETRLLTLIEGVLAANIFDWGSRACVDLYHKGTIIEIYRM 779

Query: 61  SRDKMQRPWRVDDFDVFKERMLGSGDNKPRPHKRALLFVDNSGADIVLGMLPLARELLRR 120
           SR KMQRPWRVDDFD+F+ERMLGS D KPRPHKRALLFVDNSGAD++LGMLPLARELLRR
Sbjct: 780 SRKKMQRPWRVDDFDIFEERMLGSEDKKPRPHKRALLFVDNSGADVILGMLPLARELLRR 839

Query: 121 GTEVVLVANSLPALNDVTAMELPEIVAEAAKHCDILRRAAEAGGLLVDAMINTLDSSKEN 180
           GTEVVLVANSLPALNDVTAMELP+IVAEAAKHCDILRRAAEAGGLLVDAM+N  D SK++
Sbjct: 840 GTEVVLVANSLPALNDVTAMELPDIVAEAAKHCDILRRAAEAGGLLVDAMVNIQDGSKDS 899

Query: 181 SASVPLMVVENGCGSPCIDFRQVSSEXXXXXXXXXXXXXEGMGRALHTNFNAQFKCDVLK 240
            +SVPLMVVENGCGSPCID RQVSSE             EGMGRALHTNFNA+FKCD LK
Sbjct: 900 LSSVPLMVVENGCGSPCIDLRQVSSELAAAAKEADLIILEGMGRALHTNFNARFKCDALK 959

Query: 241 LAMVKNQRLAEKLIKGKIYDCVCRYEPA 268
           LAMVKNQRLAEKLIKG IYDCVCRYEPA
Sbjct: 960 LAMVKNQRLAEKLIKGNIYDCVCRYEPA 987


>GSVIVT01023862001 assembled CDS
          Length = 367

 Score =  162 bits (410), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 98/266 (36%), Positives = 148/266 (55%), Gaps = 31/266 (11%)

Query: 1   ENEASLAVLPDLLTELDGMTEET-RLLMLIEGVLAANIFDWGSRACVDLYHKGTIIEIYR 59
           EN  ++++  +++   D + +E+ RL  L+ G+ A NIFD GS    +++ K  +     
Sbjct: 127 ENAKAISLFENVVHLNDAIEDESKRLENLVRGIFAGNIFDLGSAQLAEVFSKDGM-SFLA 185

Query: 60  MSRDKMQRPWRVDDFDVFKERMLGSGDNKPRPHKRALLFVDNSGADIVLGMLPLARELLR 119
             ++ + RPW +DD D FK +         +  K+ ++FVDNSGADI+LG+LP ARELLR
Sbjct: 186 SCQNLVPRPWVIDDLDSFKLKW------SRKSWKKVIIFVDNSGADIILGILPFARELLR 239

Query: 120 RGTEVVLVANSLPALNDVTAMELPEIVAEAAKHCDILRRAAEAGGLLVDAMINTLDSSKE 179
            G++VVL AN LP++NDVT  EL EI+A          +  +  G LV      +D+S  
Sbjct: 240 CGSQVVLAANDLPSINDVTYPELIEIIA----------KLKDENGQLV-----GVDTSN- 283

Query: 180 NSASVPLMVVENGCGSPCIDFRQVSSEXXXXXXXXXXXXXEGMGRALHTNFNAQFKCDVL 239
                 L++  +G   P ID  ++S E             EGMGR + TN  AQFKCD L
Sbjct: 284 ------LLIANSGNDLPVIDLTRISQELAYLASDADLVILEGMGRGIETNLYAQFKCDSL 337

Query: 240 KLAMVKNQRLAEKLIKGKIYDCVCRY 265
           K+ MVK+  +A+  + G++YDCV +Y
Sbjct: 338 KIGMVKHLEVAQ-FLGGRLYDCVFKY 362