Jatropha Genome Database

JcCA0313811.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0313811.10 - phase: 0 /partial
         (169 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01021618001 assembled CDS                                       248   7e-67

>GSVIVT01021618001 assembled CDS
          Length = 519

 Score =  248 bits (634), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 127/183 (69%), Positives = 141/183 (77%), Gaps = 14/183 (7%)

Query: 1   VPEESRLIFRASASSLECCCFIDNDEFLSGSDDGNIEVWGMQKKKPVYIVRNAHALFTDN 60
           VPEESRL+FRA ASSLECCCFI+NDEFLSGSDDG+IE+WGM +KKPVYIV+NAHAL    
Sbjct: 337 VPEESRLVFRAPASSLECCCFINNDEFLSGSDDGSIELWGMLRKKPVYIVKNAHALSATL 396

Query: 61  TNLEQKENGSIFNG--------------DKACSWVSSVTVCRGSDLAASGAGNGSVHLWA 106
              EQ + G I NG                A SWVSSVTVCR SDLAASGA NGSV LWA
Sbjct: 397 RQPEQSDVGKIPNGYIENGNHNHEDYNCSTAYSWVSSVTVCRSSDLAASGAANGSVRLWA 456

Query: 107 IESAPACIRPLYDVPLVGFVNSLAFSKSGEFLVAGVGQEPRLGRWGQISAARNGVAIHRL 166
           I S    IRPL+++PLVGFVNSLAFSKSG+FLVAGVGQEPRLGRWG++ AARNGVA+  L
Sbjct: 457 IGSETKDIRPLFNLPLVGFVNSLAFSKSGQFLVAGVGQEPRLGRWGRLPAARNGVAVQSL 516

Query: 167 KHS 169
           K S
Sbjct: 517 KLS 519