Jatropha Genome Database

JcCA0313601.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0313601.10 - phase: 1 /partial
         (124 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01015297001 assembled CDS                                       191   6e-50
GSVIVT01016971001 assembled CDS                                       177   1e-45
GSVIVT01009899001 assembled CDS                                       105   7e-24
GSVIVT01006129001 assembled CDS                                        99   4e-22
GSVIVT01002667001 assembled CDS                                        97   2e-21
GSVIVT01031551001 assembled CDS                                        79   4e-16

>GSVIVT01015297001 assembled CDS
          Length = 436

 Score =  191 bits (486), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 92/124 (74%), Positives = 108/124 (87%)

Query: 1   DLKVVGNKLKDILEISNTSLKTRKVVIELCNIVASRGAQLAAAGILSILKKMGKDTVKEG 60
           DL+VVG+KLKDIL+I NTSLKTRKVVIELC+IVA+RGA+L+AAGIL ILKK+G+DT+KEG
Sbjct: 309 DLRVVGSKLKDILDIPNTSLKTRKVVIELCDIVATRGARLSAAGILGILKKLGRDTMKEG 368

Query: 61  DKQKTVIALDGGLYEHYSEYSKCMENTLNELLGEEVSKNIEIVHSNDGSGIGXXXXXXSH 120
           DKQ +VIALDGGLYEHY+E+  C+E+TL ELLG EVS NI I HSNDGSGIG      SH
Sbjct: 369 DKQNSVIALDGGLYEHYTEFRTCLESTLKELLGAEVSDNIVIKHSNDGSGIGAALLAASH 428

Query: 121 SRYL 124
           S+YL
Sbjct: 429 SQYL 432


>GSVIVT01016971001 assembled CDS
          Length = 448

 Score =  177 bits (448), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 83/124 (66%), Positives = 107/124 (86%)

Query: 1   DLKVVGNKLKDILEISNTSLKTRKVVIELCNIVASRGAQLAAAGILSILKKMGKDTVKEG 60
           +LKVVG K+K+IL IS+T LK RK+V++LCNIVA+RGA+LAAA I  +LKKMG+DTV+ G
Sbjct: 309 NLKVVGIKMKEILGISDTPLKMRKIVVQLCNIVATRGARLAAAAIFGVLKKMGRDTVRPG 368

Query: 61  DKQKTVIALDGGLYEHYSEYSKCMENTLNELLGEEVSKNIEIVHSNDGSGIGXXXXXXSH 120
           +KQKTVIA+DGGL+EHYSEYSKC+ENTL EL+GE+VS+++ I H+NDGSGIG      SH
Sbjct: 369 EKQKTVIAMDGGLFEHYSEYSKCLENTLRELVGEQVSESLFIEHANDGSGIGAALLAASH 428

Query: 121 SRYL 124
           S+Y+
Sbjct: 429 SQYI 432


>GSVIVT01009899001 assembled CDS
          Length = 411

 Score =  105 bits (261), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 54/122 (44%), Positives = 81/122 (66%), Gaps = 1/122 (0%)

Query: 2   LKVVGNKLKDILEISNTSLKTRKVVIELCNIVASRGAQLAAAGILSILKKMGKDTVKEGD 61
           L  VG  L D+  +  + L  RK+V+E+C+ +  RG +LA AGI+ IL+KM +D+     
Sbjct: 291 LDAVGAILYDVAGV-KSDLSVRKMVVEVCDTIVKRGGRLAGAGIVGILQKMEEDSKDLIF 349

Query: 62  KQKTVIALDGGLYEHYSEYSKCMENTLNELLGEEVSKNIEIVHSNDGSGIGXXXXXXSHS 121
            ++TV+A+DGGLYE+Y +Y + ++  + ELLG E+SKN+ I HS DGSGIG      S+S
Sbjct: 350 GKRTVVAMDGGLYENYPQYRRYLKEAVTELLGLEMSKNVVIEHSKDGSGIGAALLAASNS 409

Query: 122 RY 123
           +Y
Sbjct: 410 KY 411


>GSVIVT01006129001 assembled CDS
          Length = 202

 Score = 99.4 bits (246), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 50/112 (44%), Positives = 76/112 (67%), Gaps = 5/112 (4%)

Query: 1   DLKVVGNKLKDILEISNTSLKTRKVVIELCNIVASRGAQLAAAGILSILKKMGKDTVKEG 60
           D +VV  KL +I  I+N++   R+VV E+C+IVA RGA+LA AGI+ I KK+G+      
Sbjct: 82  DHEVVHEKLMEIFRITNSTPLAREVVAEVCDIVAERGARLAGAGIVGITKKLGRI----- 136

Query: 61  DKQKTVIALDGGLYEHYSEYSKCMENTLNELLGEEVSKNIEIVHSNDGSGIG 112
           + +++ I ++GGLYEHY  +   M +++ E+LG E+S N+ I HS+ GSG G
Sbjct: 137 ENKRSAITVEGGLYEHYRVFRNYMHSSVWEMLGNELSDNVVIEHSHGGSGAG 188


>GSVIVT01002667001 assembled CDS
          Length = 479

 Score = 96.7 bits (239), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 50/121 (41%), Positives = 78/121 (64%), Gaps = 5/121 (4%)

Query: 1   DLKVVGNKLKDILEISNTSLKTRKVVIELCNIVASRGAQLAAAGILSILKKMGKDTVKEG 60
           D +VV  KL +I  I+N++   R+VV E+C+IVA RGA+LA AGI+ I KK+G+      
Sbjct: 359 DHEVVHEKLMEIFRITNSTPLAREVVAEVCDIVAERGARLAGAGIVGITKKLGRI----- 413

Query: 61  DKQKTVIALDGGLYEHYSEYSKCMENTLNELLGEEVSKNIEIVHSNDGSGIGXXXXXXSH 120
           + +++ + ++GGLYEHY  +   M +++ E+LG E+S N+ I HS+ GSG G      S 
Sbjct: 414 ENKRSAVTVEGGLYEHYRVFRNYMHSSVWEMLGNELSDNVVIEHSHGGSGAGAIFLAASQ 473

Query: 121 S 121
           +
Sbjct: 474 T 474


>GSVIVT01031551001 assembled CDS
          Length = 523

 Score = 79.3 bits (194), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 49/122 (40%), Positives = 78/122 (63%), Gaps = 10/122 (8%)

Query: 1   DLKVVGNKLKDILEISNTSLKTRKVVIELCNIVASRGAQLAAAGILSILKKMGKDTV--- 57
           +L  V   LK+ L+I +  LK RK+V+++C++V  R A+LAAAGI+ ILKK+G+D     
Sbjct: 369 ELMEVARILKEDLQIPDVPLKVRKLVVKVCDVVTRRAARLAAAGIVGILKKIGRDGSGGV 428

Query: 58  -------KEGDKQKTVIALDGGLYEHYSEYSKCMENTLNELLGEEVSKNIEIVHSNDGSG 110
                   +G  ++TV+A+DG LY  Y+ + + +   L E+LGEEV++ + +  + DGSG
Sbjct: 429 ASGRSRGSDGKMRRTVVAMDGSLYTRYTMFKEYLHEALCEILGEEVAQYVILKVTEDGSG 488

Query: 111 IG 112
           IG
Sbjct: 489 IG 490