Jatropha Genome Database

JcCA0313541.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0313541.20 - phase: 0 /pseudo
         (469 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01004003001 assembled CDS                                       359   1e-99
GSVIVT01038219001 assembled CDS                                       350   6e-97

>GSVIVT01004003001 assembled CDS
          Length = 476

 Score =  359 bits (922), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 185/265 (69%), Positives = 206/265 (77%), Gaps = 12/265 (4%)

Query: 54  PFFALSKGQWHTISVFIGDESGIINRIAGVFARRGYNIESLAVGLNKDKALFTIVVRGTD 113
           P    SK + HTISVF+GDESGIINRIAGVFARRGYNIESLAVGLN+DKALFTIVV GT+
Sbjct: 64  PPIQRSKVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNEDKALFTIVVSGTE 123

Query: 114 KVLQQVIEQLNKLVNVIKVEDISREPQVERELMLLKLNVDPSTHPEIMXLVDIFRTKVVD 173
            VL+QV+EQLNKLVNV+KV+D+SREPQVERELML+KLN DPS   EIM LVDIFR K+VD
Sbjct: 124 TVLRQVVEQLNKLVNVLKVKDLSREPQVERELMLIKLNADPSKRAEIMWLVDIFRAKIVD 183

Query: 174 ISEHTLTIEVTGDPGKMAAVLRNLSNFRIEELT----IALRRERMRETAPFWRFSAASYP 229
           ISEH+LTIEVTGDPGKM AV RNLS F I+EL     IALRRE+M ETAPFWRFSAASYP
Sbjct: 184 ISEHSLTIEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRREKMGETAPFWRFSAASYP 243

Query: 230 DLERTQPGDAFXXXXXXXXXXXXXXXXXXXXXXXXXXDVYPVEPYDDYSMNQVLDAHWGV 289
           DLE T P +A                           DVYPVEP++D+S+N VLD HWG 
Sbjct: 244 DLEETIPVNAL--------VRNVKRPLNGNPSTSPGGDVYPVEPFNDFSVNPVLDPHWGA 295

Query: 290 LYDEDSSGSQSHTLSMLVNDSPGVL 314
           L DEDSSG +SHTLSMLVND+PGVL
Sbjct: 296 LNDEDSSGLRSHTLSMLVNDTPGVL 320



 Score =  123 bits (308), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 64/157 (40%), Positives = 104/157 (66%), Gaps = 2/157 (1%)

Query: 64  HTISVFIGDESGIINRIAGVFARRGYNIESLAVGLNK--DKALFTIVVRGTDKVLQQVIE 121
           HT+S+ + D  G++N + GV +RR YNI+SLAVG  +   ++  T VV GTD+ + ++++
Sbjct: 307 HTLSMLVNDTPGVLNIVTGVISRRSYNIQSLAVGPAEMEGRSHITTVVPGTDESISKLVQ 366

Query: 122 QLNKLVNVIKVEDISREPQVERELMLLKLNVDPSTHPEIMXLVDIFRTKVVDISEHTLTI 181
           QL KL+++ +V DI+  P  ERELML+K+ V+ +   +++ +  IFR K VD+S+HT+T+
Sbjct: 367 QLQKLIDLHEVRDITHMPFAERELMLIKIAVNTAARRDVLDIASIFRAKAVDVSDHTITL 426

Query: 182 EVTGDPGKMAAVLRNLSNFRIEELTIALRRERMRETA 218
           E+TGD  KM A+ R L  + I E+    R   +RE+ 
Sbjct: 427 ELTGDLNKMVALQRLLEPYGICEVARTGRVALVRESG 463


>GSVIVT01038219001 assembled CDS
          Length = 482

 Score =  350 bits (899), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 182/305 (59%), Positives = 216/305 (70%), Gaps = 12/305 (3%)

Query: 21  FRSPRTSNVVVKVSGAAISKDNGNAVPVAEAPVPFFALSKGQWHTISVFIGDESGIINRI 80
            ++P+   +VV  S A       +       P P  A SK + HTISVF+GDESG+INRI
Sbjct: 35  LKNPQLGKLVVSASSAENGVGFNDKTAAVANPAPSAARSKVRRHTISVFVGDESGMINRI 94

Query: 81  AGVFARRGYNIESLAVGLNKDKALFTIVVRGTDKVLQQVIEQLNKLVNVIKVEDISREPQ 140
           AGVFARRGYNI+SLAVGLNKDKALFTIVV GT++VLQQV+EQL+KLVNV+KVEDIS EP 
Sbjct: 95  AGVFARRGYNIDSLAVGLNKDKALFTIVVSGTERVLQQVVEQLHKLVNVLKVEDISTEPH 154

Query: 141 VERELMLLKLNVDPSTHPEIMXLVDIFRTKVVDISEHTLTIEVTGDPGKMAAVLRNLSNF 200
           VERELML+K+N +P    EIM LV+IFR K+VDISEH++TIEVTGDPGKM AV RNLS F
Sbjct: 155 VERELMLIKVNANPQYRAEIMWLVNIFRAKIVDISEHSVTIEVTGDPGKMVAVQRNLSKF 214

Query: 201 RIEELT----IALRRERMRETAPFWRFSAASYPDLERTQPGDAFXXXXXXXXXXXXXXXX 256
            I E+     IALRRE+M E+APFWRFSA+SYPDLE   P + F                
Sbjct: 215 GIREIARTGKIALRREKMGESAPFWRFSASSYPDLEGEIPENTF--------VETRTKTL 266

Query: 257 XXXXXXXXXXDVYPVEPYDDYSMNQVLDAHWGVLYDEDSSGSQSHTLSMLVNDSPGVLTW 316
                     DVYPVEP D +  N+VLDAHWGVLYDED+SG +SHTLSM+VN++PGVL  
Sbjct: 267 NSESDASVGGDVYPVEPSDGFLFNKVLDAHWGVLYDEDTSGLRSHTLSMVVNNAPGVLNL 326

Query: 317 SLVLF 321
              +F
Sbjct: 327 VTGVF 331



 Score =  124 bits (311), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 65/157 (41%), Positives = 104/157 (66%), Gaps = 2/157 (1%)

Query: 64  HTISVFIGDESGIINRIAGVFARRGYNIESLAVGLNKDKAL--FTIVVRGTDKVLQQVIE 121
           HT+S+ + +  G++N + GVFARRGYNI+SLAVG  + + L   T VV GTD+ + ++++
Sbjct: 311 HTLSMVVNNAPGVLNLVTGVFARRGYNIQSLAVGHAEVEGLSRITTVVPGTDESINKLVQ 370

Query: 122 QLNKLVNVIKVEDISREPQVERELMLLKLNVDPSTHPEIMXLVDIFRTKVVDISEHTLTI 181
           QL KL+++  V DI+  P  ERELML+K+ V+ +   +++ +  IFR K +D+S+HT+T+
Sbjct: 371 QLKKLIDLHDVRDITHLPFAERELMLIKIAVNAAARRDVLDIASIFRAKAIDVSDHTITL 430

Query: 182 EVTGDPGKMAAVLRNLSNFRIEELTIALRRERMRETA 218
           E+TG   KM A+ R L  + I E+    R   +RE+ 
Sbjct: 431 ELTGALDKMVALQRLLEPYGICEVARTGRVALVRESG 467