Jatropha Genome Database

JcCA0313461.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0313461.20 + phase: 0 /partial
         (80 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01018317001 assembled CDS                                       111   6e-26
GSVIVT01018316001 assembled CDS                                       111   8e-26
GSVIVT01024334001 assembled CDS                                        85   6e-18
GSVIVT01029389001 assembled CDS                                        65   6e-12
GSVIVT01010291001 assembled CDS                                        58   9e-10

>GSVIVT01018317001 assembled CDS
          Length = 346

 Score =  111 bits (278), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 54/75 (72%), Positives = 61/75 (81%), Gaps = 3/75 (4%)

Query: 6   DELEMALQKASMPNKTVIIAVLNKAYVEPSVKSETTMLDLFLESFWYGEDTRSLLDHLLV 65
           D+LE AL KASMPNKTVII ++NKAYVE     +T+MLDLFLESFW GE TR + DHLLV
Sbjct: 48  DDLEAALSKASMPNKTVIITIVNKAYVE---GDDTSMLDLFLESFWIGEGTREMADHLLV 104

Query: 66  VAVDQTAYDRCKFKR 80
           VA DQTAYDRC F+R
Sbjct: 105 VAGDQTAYDRCIFRR 119


>GSVIVT01018316001 assembled CDS
          Length = 313

 Score =  111 bits (277), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 53/75 (70%), Positives = 62/75 (82%), Gaps = 3/75 (4%)

Query: 6   DELEMALQKASMPNKTVIIAVLNKAYVEPSVKSETTMLDLFLESFWYGEDTRSLLDHLLV 65
           D+LE AL KASMPNKTVII ++NKAYVE     +T+MLDLFLESFW GE TR + DHLLV
Sbjct: 48  DDLEAALSKASMPNKTVIITIVNKAYVE---GDDTSMLDLFLESFWIGEGTREMADHLLV 104

Query: 66  VAVDQTAYDRCKFKR 80
           VA+DQTA+DRC F+R
Sbjct: 105 VALDQTAFDRCIFRR 119


>GSVIVT01024334001 assembled CDS
          Length = 272

 Score = 85.1 bits (209), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 40/62 (64%), Positives = 50/62 (80%), Gaps = 4/62 (6%)

Query: 17 MPNKTVIIAVLNKAYVEPSVKSETTMLDLFLESFWYGEDTRSLLDHLLVVAVDQTAYDRC 76
          M +KTVI+A++NKAYV+     + TMLDLFL+ FW GE TR LLDHLL+VAVDQT+ +RC
Sbjct: 1  MADKTVILAMINKAYVD----GDKTMLDLFLDGFWLGEGTRGLLDHLLLVAVDQTSLERC 56

Query: 77 KF 78
          KF
Sbjct: 57 KF 58


>GSVIVT01029389001 assembled CDS
          Length = 547

 Score = 65.1 bits (157), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 31/69 (44%), Positives = 48/69 (69%), Gaps = 5/69 (7%)

Query: 8   LEMALQKASMPNKTVIIAVLNKAYVEPSVKSETTMLDLFLESFWYGEDTRSLLDHLLVVA 67
           L   L+KA+M +KTVI+  +N A+      +  ++LDLFLESF  G +T+ LL+HL+++A
Sbjct: 372 LREILEKAAMGDKTVILTTVNGAWA-----ANNSLLDLFLESFHIGNNTKRLLNHLVIIA 426

Query: 68  VDQTAYDRC 76
           +DQ +Y RC
Sbjct: 427 LDQKSYARC 435



 Score = 61.6 bits (148), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 29/70 (41%), Positives = 48/70 (68%), Gaps = 5/70 (7%)

Query: 7   ELEMALQKASMPNKTVIIAVLNKAYVEPSVKSETTMLDLFLESFWYGEDTRSLLDHLLVV 66
           +L+  L+ A+M +KTVI+  +N+A+      +  ++LDLFLESF  G +T+ LL+HL+++
Sbjct: 60  KLDKILKNAAMGDKTVILTTVNEAWA-----ANNSLLDLFLESFRIGNNTQRLLNHLVII 114

Query: 67  AVDQTAYDRC 76
            +D  AY RC
Sbjct: 115 TLDPKAYARC 124


>GSVIVT01010291001 assembled CDS
          Length = 288

 Score = 58.2 bits (139), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 27/60 (45%), Positives = 41/60 (68%), Gaps = 5/60 (8%)

Query: 17 MPNKTVIIAVLNKAYVEPSVKSETTMLDLFLESFWYGEDTRSLLDHLLVVAVDQTAYDRC 76
          M + TVI+  LN+A+  P      +++DLFLESF  G+ TR  L+HL+++A+DQ A+ RC
Sbjct: 1  MEDHTVILTTLNEAWAAPD-----SVIDLFLESFRIGDHTRRYLNHLVIIALDQKAFARC 55