Jatropha Genome Database

JcCA0313321.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0313321.10 + phase: 0 
         (433 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01011505001 assembled CDS                                        89   4e-18
GSVIVT01007927001 assembled CDS                                        57   1e-08
GSVIVT01014844001 assembled CDS                                        52   4e-07
GSVIVT01012197001 assembled CDS                                        48   9e-06

>GSVIVT01011505001 assembled CDS
          Length = 692

 Score = 89.0 bits (219), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 77/232 (33%), Positives = 105/232 (45%), Gaps = 25/232 (10%)

Query: 1   MEPNQKKKLFICKFCNKRYPCGKSLGGHIRIHLXXXXXXXXXXXXXXTDLEDESFVAANG 60
           ME NQ++K   CK C KR+  G+SLGGH+R H+                +E +      G
Sbjct: 1   MENNQEQK-HECKVCKKRFFSGRSLGGHMRCHMAMNPAPRDE-----NPIESDIGFEDGG 54

Query: 61  SNSKRDSELYRLRENPRKTRRFMADSSNS-------HFLQEKVCKACGKGFQSLKALCGH 113
                    Y LRENP+K+ R    +  +          Q+ +CK CGKGF S +A+ GH
Sbjct: 55  DGDGGGQTGYGLRENPKKSWRLSGSNQTAPKQEEEQEREQDHICKVCGKGFNSSRAVFGH 114

Query: 114 MACHSKNSFEDQSETTERLKDQVFDS-----QSDTETSAPSKXXXXXXXXYKTIGVYXXX 168
           M  HS+       E   R   + F S     QS  ETS P++          +   +   
Sbjct: 115 MRHHSRQ------ENLCRECGKGFSSLRAFCQSQDETSCPTRRKRSQRYKMTSNPSFSNF 168

Query: 169 XXXXXXDL-EQEQEEVAMCLMMLSKDSGFKGCFSSIADSSDNNSVVLETKSS 219
                  L E E EE A+CLM+LS+       F S+ +SSDNNSV+ E KSS
Sbjct: 169 NDSSSVTLSEPELEEGALCLMLLSRAVRSWEEFYSVPESSDNNSVIAEAKSS 220


>GSVIVT01007927001 assembled CDS
          Length = 351

 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/136 (33%), Positives = 59/136 (43%), Gaps = 30/136 (22%)

Query: 96  VCKACGKGFQSLKALCGHMACHSKNSFEDQSETTERL----------------------K 133
           VCK C K F   ++L GHM  H  NS     ET E+L                      +
Sbjct: 20  VCKFCKKSFPCGRSLGGHMRSHMINS---SFETDEKLSKTKLSSLHKAATNPDSWTSANQ 76

Query: 134 DQVFDSQSDTETSAPSKXXXXXXXX-YKTIGVYXXXXXXXX----XDLEQEQEEVAMCLM 188
             V DSQSDTET+ P++         Y                   ++EQEQEEVA+ LM
Sbjct: 77  KLVMDSQSDTETAVPNRKKRSRRRTRYMATATSSSFSFANASSSVSEIEQEQEEVAISLM 136

Query: 189 MLSKDSGFKGCFSSIA 204
           MLS+DSG  G  +S+ 
Sbjct: 137 MLSRDSGNWGGLNSVV 152


>GSVIVT01014844001 assembled CDS
          Length = 461

 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 30/112 (26%), Positives = 46/112 (41%), Gaps = 27/112 (24%)

Query: 11  ICKFCNKRYPCGKSLGGHIRIHLXXXXXXXXXXXXXXTDLEDESFVAANGSNSKRDSELY 70
           IC  C + +  GK+LGGH+R+H+                             SK++ EL 
Sbjct: 76  ICSVCKREFSSGKALGGHMRVHIQA---------------------------SKKEDELV 108

Query: 71  RLRENPRKTRRFMADSSNSHFLQEKVCKACGKGFQSLKALCGHMACHSKNSF 122
             +    K +      S ++   +  C  CGK F S K+L GHM CH +  +
Sbjct: 109 NKKTAKLKKQSVNGPGSTTNNADDTTCSLCGKNFPSRKSLFGHMRCHPEREW 160


>GSVIVT01012197001 assembled CDS
          Length = 554

 Score = 47.8 bits (112), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 20/33 (60%), Positives = 24/33 (72%)

Query: 1   MEPNQKKKLFICKFCNKRYPCGKSLGGHIRIHL 33
           ME   +K   +CK CNKRYP GKSLGGH+R H+
Sbjct: 265 MEEEDQKTKHVCKLCNKRYPSGKSLGGHMRSHM 297