Jatropha Genome Database

JcCA0313071.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0313071.20 - phase: 2 /partial
         (227 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01012245001 assembled CDS                                       296   6e-81
GSVIVT01026037001 assembled CDS                                       186   6e-48
GSVIVT01015130001 assembled CDS                                       110   4e-25
GSVIVT01026043001 assembled CDS                                       105   1e-23
GSVIVT01037061001 assembled CDS                                       104   4e-23

>GSVIVT01012245001 assembled CDS
          Length = 1177

 Score =  296 bits (757), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 141/222 (63%), Positives = 176/222 (79%), Gaps = 1/222 (0%)

Query: 3    TEEFTITSNDYISPCIMELKRIPECASLVIGHNGFGEFTLWDISRRIFVSRFSTPGTSVC 62
            TE+F I + D +SPCI+ELKRIP+CA LV+GH+GFGEF+LWDIS+RI +SRF+ P  S+ 
Sbjct: 941  TEDFIIPTYDCVSPCIVELKRIPKCAPLVVGHHGFGEFSLWDISQRILISRFAMPSISIF 1000

Query: 63   QFCPISWFSWQREVHASNYPNVAAHINRLIDATKVQFSEHSKNHSFPPLKGEDVAIWCLV 122
            +F PIS FS+Q EV  S+ P+V  HIN+++ ATK+ FS+H++N++F PL GE +A+W LV
Sbjct: 1001 EFIPISLFSFQSEVPLSSNPDVDLHINKIMAATKMWFSKHNENYTFLPLGGESIAVWLLV 1060

Query: 123  STALNTDAQHKYESSASQINPIGWWRLALLVKNTIILGSALDTRVSAIGTSAGHGIIGTL 182
            ST  ++D QH  + +  Q NP+GWWRLALLVKN +ILGSALD R +AIG SAGHGIIGT 
Sbjct: 1061 STLSDSDTQHDNQMNDCQTNPVGWWRLALLVKNMVILGSALDPRAAAIGASAGHGIIGTH 1120

Query: 183  DGLVYMWELLTGDKLGTLHKFKGGSVSCIAADDSGSGVVAVA 224
            DGLVYMWEL TG KLG+LH FKGG VSCIA DDS S V AVA
Sbjct: 1121 DGLVYMWELSTGTKLGSLHYFKGG-VSCIATDDSRSDVFAVA 1161


>GSVIVT01026037001 assembled CDS
          Length = 232

 Score =  186 bits (473), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 87/149 (58%), Positives = 114/149 (76%)

Query: 57  PGTSVCQFCPISWFSWQREVHASNYPNVAAHINRLIDATKVQFSEHSKNHSFPPLKGEDV 116
           P  S+ +F PIS FS+Q EV  S+YP+V  HIN+++ ATK+ FS++++N++F PL GE +
Sbjct: 2   PSISIFEFIPISLFSFQSEVPLSSYPDVDFHINKIMAATKMWFSKNNENYTFLPLGGESI 61

Query: 117 AIWCLVSTALNTDAQHKYESSASQINPIGWWRLALLVKNTIILGSALDTRVSAIGTSAGH 176
           ++W LV+T  ++D QH  + +  Q NP+GWWR ALLVKN +ILGSALD R +AIG SA H
Sbjct: 62  SVWLLVATLSDSDTQHDNQMNDCQTNPVGWWRPALLVKNMVILGSALDPRAAAIGASASH 121

Query: 177 GIIGTLDGLVYMWELLTGDKLGTLHKFKG 205
           GIIGT DGLVYMWEL TG KLG+LH FKG
Sbjct: 122 GIIGTHDGLVYMWELSTGTKLGSLHYFKG 150


>GSVIVT01015130001 assembled CDS
          Length = 77

 Score =  110 bits (276), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 53/66 (80%), Positives = 57/66 (86%)

Query: 140 QINPIGWWRLALLVKNTIILGSALDTRVSAIGTSAGHGIIGTLDGLVYMWELLTGDKLGT 199
           Q NP+GWWRLALLVKN +ILGSALD R +AIG SAGHGIIGT DGLVYMWEL TG KLG+
Sbjct: 5   QTNPVGWWRLALLVKNMVILGSALDPRAAAIGASAGHGIIGTHDGLVYMWELSTGTKLGS 64

Query: 200 LHKFKG 205
           LH FKG
Sbjct: 65  LHYFKG 70


>GSVIVT01026043001 assembled CDS
          Length = 156

 Score =  105 bits (263), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 49/65 (75%), Positives = 54/65 (83%)

Query: 140 QINPIGWWRLALLVKNTIILGSALDTRVSAIGTSAGHGIIGTLDGLVYMWELLTGDKLGT 199
           Q NP+GWWR ALLVKN +ILGSALD R +AIG SA HGIIGT +GLVYMWEL TG KLG+
Sbjct: 5   QTNPVGWWRPALLVKNMVILGSALDPRAAAIGASASHGIIGTHEGLVYMWELSTGTKLGS 64

Query: 200 LHKFK 204
           LH FK
Sbjct: 65  LHYFK 69


>GSVIVT01037061001 assembled CDS
          Length = 73

 Score =  104 bits (259), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 50/65 (76%), Positives = 54/65 (83%)

Query: 140 QINPIGWWRLALLVKNTIILGSALDTRVSAIGTSAGHGIIGTLDGLVYMWELLTGDKLGT 199
           Q NP+GWWRLALLVKN +ILGSAL  R +AIG SA HGIIGT DGLVYMWEL TG KLG+
Sbjct: 5   QTNPVGWWRLALLVKNMVILGSALGPRAAAIGASASHGIIGTHDGLVYMWELSTGTKLGS 64

Query: 200 LHKFK 204
           LH FK
Sbjct: 65  LHYFK 69