Jatropha Genome Database

JcCA0313071.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0313071.10 + phase: 0 
         (365 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01008552001 assembled CDS                                       607   e-174
GSVIVT01008133001 assembled CDS                                       544   e-155
GSVIVT01012244001 assembled CDS                                       506   e-144
GSVIVT01036557001 assembled CDS                                       492   e-139
GSVIVT01019151001 assembled CDS                                        61   1e-09

>GSVIVT01008552001 assembled CDS
          Length = 340

 Score =  607 bits (1564), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 283/335 (84%), Positives = 304/335 (90%), Gaps = 3/335 (0%)

Query: 31  MWRAFFEPYHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRILGPKASCISFKDSACRCF 90
           MWR FF+PYHLIIVQDGDP+KTI+VP+GFDYELYNRND+NRILGPKASCISFKDSACRCF
Sbjct: 1   MWRPFFQPYHLIIVQDGDPTKTIRVPEGFDYELYNRNDVNRILGPKASCISFKDSACRCF 60

Query: 91  GYMVSKKKYIFTIDDDCFVAKDPSGKEINALEQHIKNLLSPSTPHFFNTLYDPYRDGADF 150
           G++VSKKKYIFTIDDDCFVAKDPSGKEINAL QHI+NLL+PSTP FFNTLYDP+R+GADF
Sbjct: 61  GFLVSKKKYIFTIDDDCFVAKDPSGKEINALAQHIQNLLTPSTPFFFNTLYDPFREGADF 120

Query: 151 VRGYPFSLREGVITAVSHGLWLNIPDYDAPTQLVKPLERNTRYVDAVMTVPKGTLFPMCG 210
           VRGYPFSLREG  TA+SHGLWLNIPDYDAPTQLVKPLERNTRYVDAVMT+PKGTLFPMCG
Sbjct: 121 VRGYPFSLREGAPTAISHGLWLNIPDYDAPTQLVKPLERNTRYVDAVMTIPKGTLFPMCG 180

Query: 211 MNLAFNRELIGPAMYFGLMGDGQPVGRYDDMWAGWCMKVICDHMGWGVKTGLPYIWHSKA 270
           MNL F+RELIGPAMYFGLMGDGQP+GRYDDMWAGWC KVICDHM  GVKTGLPYIWHSKA
Sbjct: 181 MNLGFDRELIGPAMYFGLMGDGQPIGRYDDMWAGWCAKVICDHMSLGVKTGLPYIWHSKA 240

Query: 271 SNPFVNLKKEYKGIFWQEQLIPFFQSVVLPKECTTVQKCYIELAKQVKEKFADEDPYFVK 330
           SNPFVNLKKEYKGI+WQE +IPFFQSVV PKEC TVQ+CYIEL+KQVKEK    DPYF K
Sbjct: 241 SNPFVNLKKEYKGIYWQEDIIPFFQSVVFPKECITVQQCYIELSKQVKEKLGHVDPYFQK 300

Query: 331 LADAMVTWIEAWNELNSPEGKSATGSAKLLNGTAK 365
           LAD+MVTWIEAW ELN P   +    A   NG  K
Sbjct: 301 LADSMVTWIEAWEELNPP---TKAAPAAQPNGVKK 332


>GSVIVT01008133001 assembled CDS
          Length = 301

 Score =  544 bits (1402), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 264/335 (78%), Positives = 283/335 (84%), Gaps = 34/335 (10%)

Query: 31  MWRAFFEPYHLIIVQDGDPSKTIKVPDGFDYELYNRNDINRILGPKASCISFKDSACRCF 90
           MWR FF+ YHLIIVQDGDPSKTI+                             DSACRCF
Sbjct: 1   MWRPFFQQYHLIIVQDGDPSKTIR-----------------------------DSACRCF 31

Query: 91  GYMVSKKKYIFTIDDDCFVAKDPSGKEINALEQHIKNLLSPSTPHFFNTLYDPYRDGADF 150
           GY+VSKKKYI+TIDDDCFVAKDPSGK+INALEQHIKNLL+PSTP FFNTLYDPYRDGADF
Sbjct: 32  GYLVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLAPSTPFFFNTLYDPYRDGADF 91

Query: 151 VRGYPFSLREGVITAVSHGLWLNIPDYDAPTQLVKPLERNTRYVDAVMTVPKGTLFPMCG 210
           VRGYPFSLREGV TAVSHGLWLNIPDYDAPTQLVKP ERNTRYVDAVMT+PKGTLFPMCG
Sbjct: 92  VRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVKPRERNTRYVDAVMTIPKGTLFPMCG 151

Query: 211 MNLAFNRELIGPAMYFGLMGDGQPVGRYDDMWAGWCMKVICDHMGWGVKTGLPYIWHSKA 270
           MNL FNRELIGPAMYFGLMGDGQP+GRYDDMWAGWC K+ICDHMG G+KTGLPYIWHSKA
Sbjct: 152 MNLGFNRELIGPAMYFGLMGDGQPIGRYDDMWAGWCTKIICDHMGLGIKTGLPYIWHSKA 211

Query: 271 SNPFVNLKKEYKGIFWQEQLIPFFQSVVLPKECTTVQKCYIELAKQVKEKFADEDPYFVK 330
           SNPFVNLKKEYKGI+WQE+LIPFFQSV+LPKECTTVQKCYIEL+KQV+ K    D YF+K
Sbjct: 212 SNPFVNLKKEYKGIYWQEELIPFFQSVILPKECTTVQKCYIELSKQVRAKLGKVDEYFIK 271

Query: 331 LADAMVTWIEAWNELNSPEGKSATGSAKLLNGTAK 365
           LADAMVTWIEAW+ELN P G     SA++ NG AK
Sbjct: 272 LADAMVTWIEAWDELN-PSG----ASAEVRNGPAK 301


>GSVIVT01012244001 assembled CDS
          Length = 269

 Score =  506 bits (1302), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 239/273 (87%), Positives = 253/273 (92%), Gaps = 4/273 (1%)

Query: 93  MVSKKKYIFTIDDDCFVAKDPSGKEINALEQHIKNLLSPSTPHFFNTLYDPYRDGADFVR 152
           MVSKKKYIFTIDDDCFVAKDPSGK+INALEQHIKNLL+PSTP FFNTLYDPYRDGADFVR
Sbjct: 1   MVSKKKYIFTIDDDCFVAKDPSGKDINALEQHIKNLLTPSTPFFFNTLYDPYRDGADFVR 60

Query: 153 GYPFSLREGVITAVSHGLWLNIPDYDAPTQLVKPLERNTRYVDAVMTVPKGTLFPMCGMN 212
           GYPFSLREGV TAVSHGLWLNIPDYDAPTQLVKP ERNTRYVDAV+TVPKGTLFPMCGMN
Sbjct: 61  GYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVKPRERNTRYVDAVLTVPKGTLFPMCGMN 120

Query: 213 LAFNRELIGPAMYFGLMGDGQPVGRYDDMWAGWCMKVICDHMGWGVKTGLPYIWHSKASN 272
           LAFNRELIGPAMYFGLMGDGQP+GRYDDMWAGWCMKVICDH+GWGVKTGLPYIWHSKASN
Sbjct: 121 LAFNRELIGPAMYFGLMGDGQPIGRYDDMWAGWCMKVICDHLGWGVKTGLPYIWHSKASN 180

Query: 273 PFVNLKKEYKGIFWQEQLIPFFQSVVLPKECTTVQKCYIELAKQVKEKFADEDPYFVKLA 332
           PFVNLKKEY GI+WQE+LIPFFQ+  LPKECTTVQ+CY+EL+KQVK K    DPYFVKLA
Sbjct: 181 PFVNLKKEYSGIYWQEELIPFFQAATLPKECTTVQQCYLELSKQVKAKLEKVDPYFVKLA 240

Query: 333 DAMVTWIEAWNELNSPEGKSATGSAKLLNGTAK 365
           DAM+TWIEAW+ELN     SA  SA L NG+AK
Sbjct: 241 DAMITWIEAWDELNP----SAGDSANLTNGSAK 269


>GSVIVT01036557001 assembled CDS
          Length = 267

 Score =  492 bits (1267), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 234/272 (86%), Positives = 251/272 (92%), Gaps = 5/272 (1%)

Query: 93  MVSKKKYIFTIDDDCFVAKDPSGKEINALEQHIKNLLSPSTPHFFNTLYDPYRDGADFVR 152
           MVSKKKYIFTIDDDCFVAKDPSGK+INALEQHIKNLLSPSTP FFNTLYDP+R+GAD+VR
Sbjct: 1   MVSKKKYIFTIDDDCFVAKDPSGKQINALEQHIKNLLSPSTPFFFNTLYDPFREGADYVR 60

Query: 153 GYPFSLREGVITAVSHGLWLNIPDYDAPTQLVKPLERNTRYVDAVMTVPKGTLFPMCGMN 212
           GYPFSLREGV TAVSHGLWLNIPDYDAPTQLVKPLERNTR+VDAV+T+PKGTLFPMCGMN
Sbjct: 61  GYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVKPLERNTRFVDAVLTIPKGTLFPMCGMN 120

Query: 213 LAFNRELIGPAMYFGLMGDGQPVGRYDDMWAGWCMKVICDHMGWGVKTGLPYIWHSKASN 272
           LAF+R+LIGPAMYFGLMGDGQP+GRYDDMWAGWC+KV CDH+G GVKTGLPYIWHSKASN
Sbjct: 121 LAFDRDLIGPAMYFGLMGDGQPIGRYDDMWAGWCVKVTCDHLGLGVKTGLPYIWHSKASN 180

Query: 273 PFVNLKKEYKGIFWQEQLIPFFQSVVLPKECTTVQKCYIELAKQVKEKFADEDPYFVKLA 332
           PFVNLKKEY GIFWQE++IPFFQSV LPK+CTTVQKCY+ELAK VKEK    DPYFVKL 
Sbjct: 181 PFVNLKKEYNGIFWQEEIIPFFQSVSLPKDCTTVQKCYVELAKLVKEKLGKVDPYFVKLG 240

Query: 333 DAMVTWIEAWNELNSPEGKSATGSAKLLNGTA 364
           DAMVTWIEAW+ELN      A GSAK  NGTA
Sbjct: 241 DAMVTWIEAWDELN-----PAGGSAKRPNGTA 267


>GSVIVT01019151001 assembled CDS
          Length = 159

 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 27/63 (42%), Positives = 42/63 (66%), Gaps = 2/63 (3%)

Query: 14 DELDIVIPTIRN--LDFLEMWRAFFEPYHLIIVQDGDPSKTIKVPDGFDYELYNRNDINR 71
          DE+DIVI  +      FL  WR  F  +HLIIV+D D  + +K+P+GF+  +Y ++DI+R
Sbjct: 9  DEVDIVIGALHADLTSFLNEWRPLFSRFHLIIVKDPDLREELKIPEGFNLHVYTKSDIDR 68

Query: 72 ILG 74
          ++G
Sbjct: 69 VVG 71



 Score = 58.5 bits (140), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 34/55 (61%)

Query: 288 EQLIPFFQSVVLPKECTTVQKCYIELAKQVKEKFADEDPYFVKLADAMVTWIEAW 342
           E+++PFFQSV L +   T + C +E+   VKE+ A  DP F + A AM  WI+ W
Sbjct: 90  EEVVPFFQSVRLSQAAVTTEDCMLEIVALVKERLATLDPVFARAAQAMADWIKLW 144