Jatropha Genome Database

JcCA0313021.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0313021.10 + phase: 0 
         (284 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01031240001 assembled CDS                                       202   1e-52
GSVIVT01029178001 assembled CDS                                       118   4e-27

>GSVIVT01031240001 assembled CDS
          Length = 471

 Score =  202 bits (515), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 94/160 (58%), Positives = 124/160 (77%)

Query: 122 ILNENGIVQPKRVAFVGSGPMPLTSLVMATNHLKSTHFDNFDIDESANYVARQIVASDTD 181
           +L++N    P ++AFVGSGP+PLTS+V+A+ HL +T F N+DID +AN +A  +V+SD D
Sbjct: 260 LLSQNCTHVPSKIAFVGSGPLPLTSIVLASYHLTTTSFHNYDIDPAANSMAAHLVSSDPD 319

Query: 182 LEKRMKFHTCDVMEVKEKFGEYDCIFLAALVGMSKEEKVKILGHVRKYMKAGGNLLLRSA 241
             KRM FHT D+M V  +  EYD ++LAALVGM KEEK++++ H+ K+M  G  L+LRSA
Sbjct: 320 FSKRMLFHTTDIMNVTNELKEYDVVYLAALVGMDKEEKIQVMDHLAKHMAPGALLMLRSA 379

Query: 242 NGARAFLYPVIEEDDLIGFEVLSIFHPNNEVINSVVLVRK 281
           +GARAFLYPVI+  DL GFEVLSIFHP +EVINSVV+ RK
Sbjct: 380 HGARAFLYPVIDPCDLRGFEVLSIFHPTDEVINSVVVARK 419


>GSVIVT01029178001 assembled CDS
          Length = 160

 Score =  118 bits (295), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 53/63 (84%), Positives = 58/63 (92%)

Query: 220 VKILGHVRKYMKAGGNLLLRSANGARAFLYPVIEEDDLIGFEVLSIFHPNNEVINSVVLV 279
           VKILGHVRKYMK GG LL+RSA GARAFLYPV+EE+DL+GFEVL+IFHP NEVINSVVL 
Sbjct: 96  VKILGHVRKYMKEGGTLLVRSAKGARAFLYPVVEEEDLLGFEVLTIFHPTNEVINSVVLA 155

Query: 280 RKP 282
           RKP
Sbjct: 156 RKP 158



 Score =  117 bits (293), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 57/96 (59%), Positives = 72/96 (75%)

Query: 1  MAYLQNSIFETQISAEHLIARITEIHNSVSKLDSLRPSKQVNTLLTNLVNVCILPSSIDI 60
          MA LQ S  +T +S E LIARI +IH ++ KL+SLRPSKQVN+L T+LV +C  PSSIDI
Sbjct: 1  MASLQQSSLKTNVSTELLIARIVQIHANICKLESLRPSKQVNSLFTHLVKLCTPPSSIDI 60

Query: 61 KTLSPQVQEMRNSLINICGRAEGLLELEFAIFLNKI 96
            L  ++Q +R SLI +CGRAEGLLELEF+ FL  +
Sbjct: 61 TALPEEIQLIRQSLITLCGRAEGLLELEFSTFLTNV 96