Jatropha Genome Database

JcCA0312961.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0312961.10 - phase: 0 /partial
         (402 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01032996001 assembled CDS                                       498   e-141
GSVIVT01004941001 assembled CDS                                       477   e-135
GSVIVT01038492001 assembled CDS                                       147   9e-36
GSVIVT01023985001 assembled CDS                                       145   3e-35
GSVIVT01036290001 assembled CDS                                       111   6e-25

>GSVIVT01032996001 assembled CDS
          Length = 479

 Score =  498 bits (1283), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 236/265 (89%), Positives = 249/265 (93%)

Query: 94  MKFGGSSVASAERMKEVADLILSFPNERPVIVLSAMGKTTNKLLLAGERAVSCGVTNVET 153
           MKFGGSSVASAERM+EVADLILSFPNERPVIVLSAMGKTTNKLLLAGE+AVSCGV+N   
Sbjct: 1   MKFGGSSVASAERMREVADLILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVSNASC 60

Query: 154 IDELSFIKELHLRTVDELEVDKSVIEPHLEELEQLLKGVAMMKELTPRTRDYLVSFGECM 213
           IDEL+FIKELHLRT DEL VD SVI  HLEELEQLLKG+AMMKELT RT+DYLVSFGECM
Sbjct: 61  IDELTFIKELHLRTADELGVDSSVISAHLEELEQLLKGIAMMKELTLRTKDYLVSFGECM 120

Query: 214 STRIFAAYLNKIGAKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLYGDWISDPAIP 273
           STR+FAAY+NKIGAKARQYDAFDIGFITTDDFTNADILEATYPAVAKRL GDWISDPAIP
Sbjct: 121 STRLFAAYMNKIGAKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLLGDWISDPAIP 180

Query: 274 IVTGFLGKGWRSCAITTLGRGGSDLTATTIGKALSLREIQVWKDVDGVLTCDPNIYPAAE 333
           IVTGFLGKGWRSCA+TTLGRGGSDLTATT+GKAL LREIQVWKDVDGVLTCDPNIY  A+
Sbjct: 181 IVTGFLGKGWRSCAVTTLGRGGSDLTATTLGKALGLREIQVWKDVDGVLTCDPNIYSHAK 240

Query: 334 PVPYLTFDEAAELAYFGAQVSNPMA 358
           PV YLTFDEAAELAYFGAQV +P +
Sbjct: 241 PVEYLTFDEAAELAYFGAQVLHPQS 265


>GSVIVT01004941001 assembled CDS
          Length = 482

 Score =  477 bits (1227), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 227/265 (85%), Positives = 243/265 (91%)

Query: 94  MKFGGSSVASAERMKEVADLILSFPNERPVIVLSAMGKTTNKLLLAGERAVSCGVTNVET 153
           MKFGGSS+ASAERM+EVADL+L F +ERPVIVLSAMGKTTN LLLAGE+AVSCGV+N   
Sbjct: 1   MKFGGSSLASAERMREVADLVLQFRDERPVIVLSAMGKTTNNLLLAGEKAVSCGVSNASE 60

Query: 154 IDELSFIKELHLRTVDELEVDKSVIEPHLEELEQLLKGVAMMKELTPRTRDYLVSFGECM 213
           IDELS +KELHLRTV EL +D SVI  HLEELEQLLKG+AMMKELT RT DYLVSFGECM
Sbjct: 61  IDELSLVKELHLRTVQELGLDSSVISGHLEELEQLLKGIAMMKELTFRTTDYLVSFGECM 120

Query: 214 STRIFAAYLNKIGAKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLYGDWISDPAIP 273
           STRIFAAYLNKIGAKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLY DWI+DPAIP
Sbjct: 121 STRIFAAYLNKIGAKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLYNDWINDPAIP 180

Query: 274 IVTGFLGKGWRSCAITTLGRGGSDLTATTIGKALSLREIQVWKDVDGVLTCDPNIYPAAE 333
           IVTGFLGKGW+S A+TTLGRGGSDLTAT IG+AL L+EIQVWKDVDGVLTCDP+IYP A 
Sbjct: 181 IVTGFLGKGWKSGAVTTLGRGGSDLTATAIGRALGLQEIQVWKDVDGVLTCDPSIYPRAL 240

Query: 334 PVPYLTFDEAAELAYFGAQVSNPMA 358
           PVPYLTFDEAAELAYFGAQV +P A
Sbjct: 241 PVPYLTFDEAAELAYFGAQVLHPQA 265


>GSVIVT01038492001 assembled CDS
          Length = 108

 Score =  147 bits (371), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 68/84 (80%), Positives = 74/84 (88%)

Query: 231 QYDAFDIGFITTDDFTNADILEATYPAVAKRLYGDWISDPAIPIVTGFLGKGWRSCAITT 290
           +YDAFDIGFITTDDFTN DI EATYPAVAKRLY DWI+ PAIPIVTG LGKGW+S A+T 
Sbjct: 21  KYDAFDIGFITTDDFTNVDISEATYPAVAKRLYNDWINGPAIPIVTGLLGKGWKSGAVTI 80

Query: 291 LGRGGSDLTATTIGKALSLREIQV 314
           LGRGGSDL AT+IG AL L+EIQV
Sbjct: 81  LGRGGSDLIATSIGGALGLQEIQV 104


>GSVIVT01023985001 assembled CDS
          Length = 156

 Score =  145 bits (366), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 66/84 (78%), Positives = 77/84 (91%)

Query: 231 QYDAFDIGFITTDDFTNADILEATYPAVAKRLYGDWISDPAIPIVTGFLGKGWRSCAITT 290
           +YDAF+IGFITTDDFT+ADIL ATYPAVAKRLY DW++ PAIPIVTG LGKGW+S A+TT
Sbjct: 67  KYDAFEIGFITTDDFTDADILGATYPAVAKRLYNDWVNGPAIPIVTGLLGKGWKSGAVTT 126

Query: 291 LGRGGSDLTATTIGKALSLREIQV 314
           L RGGSDLTAT+IG+AL L+EIQ+
Sbjct: 127 LSRGGSDLTATSIGRALGLQEIQL 150


>GSVIVT01036290001 assembled CDS
          Length = 871

 Score =  111 bits (278), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 85/310 (27%), Positives = 152/310 (49%), Gaps = 26/310 (8%)

Query: 92  CVMKFGGSSVASAERMKEVADLILSFPNERPVIVLSAMGKTTNKLLLAGERAVSCGVTNV 151
            V KFGG+ V ++ER+K VA++I+   +ER ++V+SAM K T+ +     +A S   + +
Sbjct: 43  SVHKFGGTCVGTSERIKNVAEIIVKDDSERKLVVVSAMSKVTDMMYDLIYKAQSRDDSYI 102

Query: 152 ETIDELSFIKELHLRTVDELEVDK------SVIEPHLEELEQLLKGVAMMKELTPRTRDY 205
             +D    + E H  T  +L          S +   + E++++L+ + +    +    D 
Sbjct: 103 SAVDA---VLEKHRLTALDLLDGDDLASFLSRLHHDINEIKEMLRAIYIAGHASELFSDI 159

Query: 206 LVSFGECMSTRIFAAYLNKIGAKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLYGD 265
           +V  GE  S ++ ++ + K G   +  D  D+  +     T+A+ ++  +     RL   
Sbjct: 160 IVGHGELWSAQMLSSVVRKKGIDCKWMDTRDVLIVNP---TSANQVDPDFVESEMRLEKW 216

Query: 266 WISDPAIPIV-TGFLGKGWRSCAITTLGRGGSDLTATTIGKALSLREIQVWKDVDGVLTC 324
           +  +P+  IV TGF+    ++   TTL R GSD +A  +G     R++ +W DVDGV + 
Sbjct: 217 FFQNPSKTIVATGFIASTPQNIP-TTLKRDGSDFSAAIMGALFRARQVTIWTDVDGVYSA 275

Query: 325 DPNIYPAAEPVPYLTFDEAAELAYFGAQVSNPMASSWLSMQLPYIEFGC------IFYLS 378
           DP     A  +  L++ EA E++YFGA V +P         +P +++G       IF LS
Sbjct: 276 DPRKVAEAVILNQLSYQEAWEMSYFGANVLHPRTI------IPVMQYGIPIVIRNIFNLS 329

Query: 379 IKSISLLLPN 388
                +  P+
Sbjct: 330 APGTMICRPS 339