Jatropha Genome Database

JcCA0312871.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0312871.20 + phase: 0 
         (190 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01011110001 assembled CDS                                       293   2e-80

>GSVIVT01011110001 assembled CDS
          Length = 252

 Score =  293 bits (751), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 143/197 (72%), Positives = 163/197 (82%), Gaps = 13/197 (6%)

Query: 3   TTEVLQLIEEGLVSSRLLDPTKADTAKSRGLSIEKKIEFLESLTGKVSNRRSRRWINDRL 62
           T EVLQ  ++ L+SS L DP+K +  KS GLSIEKKIEFLE+L GKVSNRRSRRW+NDRL
Sbjct: 6   TGEVLQRAQDILLSSPLQDPSKGENEKSCGLSIEKKIEFLENLAGKVSNRRSRRWLNDRL 65

Query: 63  LMELVPRLNAEEIRGLFAPPPWGDDVPLSPFCMTNVGEWEKFRNIDMDKQ---------- 112
           LMELVPRLN +EIRGLFAPPPWGDDVPLSPFCMTNVGEW+KFRNIDMDKQ          
Sbjct: 66  LMELVPRLNGDEIRGLFAPPPWGDDVPLSPFCMTNVGEWDKFRNIDMDKQDGMIKALKGP 125

Query: 113 ---RRGRVDADKVAVLNAWRRIDSRTREALRRSFLTDLIEGYEACIRTFIQESGDEEVLA 169
              R+G VDADK+AVLNAW R++ RTREALRRSFL+++IEGYE C+R FI++SGD +VL 
Sbjct: 126 SSKRKGHVDADKIAVLNAWHRVNCRTREALRRSFLSEVIEGYEECLRAFIKDSGDGDVLV 185

Query: 170 LQVQDPFHRLLLHGVCE 186
           L VQDPF RLLLHGVCE
Sbjct: 186 LHVQDPFRRLLLHGVCE 202