Jatropha Genome Database
- JcCA0312871.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCA0312871.10 - phase: 0
(343 letters)
Database: grape_pep_20100319
26,346 sequences; 9,959,944 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
GSVIVT01011109001 assembled CDS 231 3e-61
GSVIVT01021787001 assembled CDS 83 2e-16
GSVIVT01018094001 assembled CDS 77 8e-15
GSVIVT01000717001 assembled CDS 76 2e-14
GSVIVT01015006001 assembled CDS 73 2e-13
GSVIVT01023585001 assembled CDS 66 3e-11
>GSVIVT01011109001 assembled CDS
Length = 403
Score = 231 bits (590), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 144/356 (40%), Positives = 197/356 (55%), Gaps = 16/356 (4%)
Query: 1 MEGQNCYQNPLELMLPNLDGIDNHVSYGADDDLNQHSVMSDGRSKNMTNSLPLPQSQWFH 60
ME Q+ ++NPL+LM + G N SY DD + H G+++N N+L L SQW H
Sbjct: 46 MEEQSGHENPLQLMSFSFGGSINDASYVPKDDPSHHFTRGSGKNENPPNALYL--SQWIH 103
Query: 61 CQRTPQNYYEFLTENSSLVEKAPTH-VLESIPQTVSDSHFIQGMTGIQTELLYNSSGMAC 119
Q T NY +FL E+S+ KAP ++++IP V H + G++ I +E+LYNS AC
Sbjct: 104 GQPTSHNYVKFLEESSTFPHKAPAKDIVDAIPLPVGSLHAVNGVSEIPSEVLYNSLANAC 163
Query: 120 GSNPVDSSSDMDAWKLNLHPCIFNVDNQEDS--LNVRCLKQND-------EGDPVKKCKC 170
G D S MDAWK NL + N ++ + C QN+ G V K
Sbjct: 164 GFKLADPSLIMDAWKENLSVPVLNNHHEASTSAAGFLCSSQNEVTYLNPQNGGQVNKFTS 223
Query: 171 LQHHSKSQSHTSWEEEPSEAIGNLSYSRPRAKVAASVFLSNSSYNVSXXXXXXX---XXX 227
Q+ +Q TS +E +E N+S R +A F S + S
Sbjct: 224 TQYQICTQDCTSRTQELNEDNFNVSKHNSRVAIAPPCFQSKPRSSASRQRASATDRRRRL 283
Query: 228 XXXXXLKALHNLVPQSVEGSQTAMVDDIIDYVKFLQLQVKELSRSRLGGELRSDPSIFLE 287
LKAL L+P S EG + +++DDIIDY+K LQLQ+K+LS+SRLGG+ SDP IFLE
Sbjct: 284 RISERLKALQVLLPHS-EGGKASVLDDIIDYIKHLQLQIKDLSQSRLGGQSTSDPFIFLE 342
Query: 288 GYHHYIVHEQFRTEPLEETFTRLLEVNPSAATKFLESKGLFVMPMALADTISQQSI 343
GY HYI+H+Q EPLEE +LLEVNPS AT+ LE +GL+VMPM L + + Q +
Sbjct: 343 GYGHYILHDQMLKEPLEEMMGKLLEVNPSEATQLLEGRGLYVMPMTLVEGLLQTMV 398
>GSVIVT01021787001 assembled CDS
Length = 261
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/117 (41%), Positives = 72/117 (61%), Gaps = 11/117 (9%)
Query: 233 LKALHNLVPQSVEGSQTAMVDDIIDYVKFLQLQVKELSRSRLGG-----ELRSDPSIF-- 285
+KAL LVP + + + AM+D+I+DYVKFL+LQVK LS SRLGG +L +D +
Sbjct: 125 MKALQELVPSANKTDRAAMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAQLVADVPLLSI 184
Query: 286 ----LEGYHHYIVHEQFRTEPLEETFTRLLEVNPSAATKFLESKGLFVMPMALADTI 338
EG + E++ T+ E+ +L+E + AA +FL+SK L +MP++LA I
Sbjct: 185 EGDGTEGGSNQQAWEKWSTDGTEQQVAKLMEEDVGAAMQFLQSKALCIMPISLASAI 241
>GSVIVT01018094001 assembled CDS
Length = 313
Score = 77.4 bits (189), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 48/117 (41%), Positives = 72/117 (61%), Gaps = 11/117 (9%)
Query: 233 LKALHNLVPQSVEGSQTAMVDDIIDYVKFLQLQVKELSRSRLGG-----ELRSD---PSI 284
+KAL LVP S + + AM+D+I+DYVKFL+LQVK LS SRLGG +L +D P++
Sbjct: 177 MKALQELVPSSNKTDRAAMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAQLVADIPLPAV 236
Query: 285 ---FLEGYHHYIVHEQFRTEPLEETFTRLLEVNPSAATKFLESKGLFVMPMALADTI 338
EG + +++ + E +L+E + AA +FL+SK L +MP++LA I
Sbjct: 237 EGETGEGGSNQQAWDKWSNDGTEREVAKLMEEDVGAAMQFLQSKALCIMPISLAAAI 293
>GSVIVT01000717001 assembled CDS
Length = 289
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 48/119 (40%), Positives = 66/119 (55%), Gaps = 13/119 (10%)
Query: 236 LHNLVPQSVEGSQTAMVDDIIDYVKFLQLQVKELSRSRLGGELRSDPSI----------- 284
L LVP + + AM+D+I+DYVKFL+LQVK LS SRLGG P +
Sbjct: 156 LQELVPSVNKTDRAAMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAPLVTDIPLASVEEE 215
Query: 285 FLEGYHHYIVHEQFRTEPLEETFTRLLEVNPSAATKFLESKGLFVMPMALADTI--SQQ 341
EG + E++ + E +L+E N AA +FL+SK L +MP++LA I SQQ
Sbjct: 216 ASEGGRNEPAWEKWSNDGTERQVAKLMEENVGAAMQFLQSKALCIMPISLASAIYHSQQ 274
>GSVIVT01015006001 assembled CDS
Length = 389
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/120 (40%), Positives = 66/120 (55%), Gaps = 13/120 (10%)
Query: 233 LKALHNLVPQSVEGSQTAMVDDIIDYVKFLQLQVKELSRSRLGGELRSDPSIF---LEGY 289
+K L LVP S + + +M+D+II+YVKFLQLQVK LS SRLG P I EG
Sbjct: 175 MKNLQELVPNSNKTDKASMLDEIIEYVKFLQLQVKVLSMSRLGAAEAVVPLITDGQAEGS 234
Query: 290 HHYIVH------EQFRTEP----LEETFTRLLEVNPSAATKFLESKGLFVMPMALADTIS 339
+ E P E+ +L+E N + A ++L+SKGL +MP+ALA IS
Sbjct: 235 KGLSLSPSAGQAEDICQSPDQIAFEQEVVKLMESNVTMAMQYLQSKGLCLMPIALATAIS 294
>GSVIVT01023585001 assembled CDS
Length = 282
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 65/124 (52%), Gaps = 22/124 (17%)
Query: 233 LKALHNLVPQSVEGSQTAMVDDIIDYVKFLQLQVKELSRSRLGGELRSDPSIF---LEGY 289
+KAL LVP + + + +M+D+IIDYVKFLQLQVK LS SRLGG P + EG
Sbjct: 130 MKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVADMSSEGG 189
Query: 290 HHYI------------VHEQFRTEPLEETFT-------RLLEVNPSAATKFLESKGLFVM 330
I +T ++ T +L+E + +A ++L+ KGL +M
Sbjct: 190 GDCIQASGTSGPTGGRATNGTQTTTSNDSLTVTEHQVAKLMEEDMGSAMQYLQGKGLCLM 249
Query: 331 PMAL 334
P++L
Sbjct: 250 PISL 253