Jatropha Genome Database

JcCA0312771.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0312771.10 + phase: 0 /pseudo
         (737 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01009580001 assembled CDS                                       230   2e-60
GSVIVT01015377001 assembled CDS                                       184   2e-46
GSVIVT01008821001 assembled CDS                                       159   5e-39
GSVIVT01036964001 assembled CDS                                        86   9e-17
GSVIVT01036961001 assembled CDS                                        74   3e-13
GSVIVT01021415001 assembled CDS                                        57   4e-08
GSVIVT01033968001 assembled CDS                                        51   2e-06
GSVIVT01014071001 assembled CDS                                        50   5e-06

>GSVIVT01009580001 assembled CDS
          Length = 152

 Score =  230 bits (587), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 108/123 (87%), Positives = 114/123 (92%)

Query: 232 MYPTLDVGDRILAEKVSYIFRKPEVSDIVIFKAPPILQEIGYGSGDVFIKRIVATAGDIV 291
           MYPTLDVGDRILAEKVSY+FR PEVSDIVIFK PPILQEIGY +GDVFIKRIVA AGD V
Sbjct: 1   MYPTLDVGDRILAEKVSYVFRNPEVSDIVIFKVPPILQEIGYSAGDVFIKRIVAKAGDYV 60

Query: 292 EVCEGKLYVNGVVQDEDFILEPLAYEMEPVLVPEGYVFVMGDNRNNSFDSHNWGPLPIQN 351
           EV EGKL VNGV Q+EDFILEPLAY M+PVLVPEGYVFV+GDNRNNSFDSHNWGPLPI+N
Sbjct: 61  EVSEGKLMVNGVAQEEDFILEPLAYNMDPVLVPEGYVFVLGDNRNNSFDSHNWGPLPIKN 120

Query: 352 IVG 354
           IVG
Sbjct: 121 IVG 123


>GSVIVT01015377001 assembled CDS
          Length = 175

 Score =  184 bits (466), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 87/123 (70%), Positives = 100/123 (81%)

Query: 232 MYPTLDVGDRILAEKVSYIFRKPEVSDIVIFKAPPILQEIGYGSGDVFIKRIVATAGDIV 291
           MYPT DVGDRI+AEKVSY FRKP  +DIVIFK+PP+LQE+GY   DVFIKRIVA  GD V
Sbjct: 1   MYPTFDVGDRIVAEKVSYYFRKPCANDIVIFKSPPVLQEVGYTDEDVFIKRIVAKEGDTV 60

Query: 292 EVCEGKLYVNGVVQDEDFILEPLAYEMEPVLVPEGYVFVMGDNRNNSFDSHNWGPLPIQN 351
           EV EGKL VNGVV++E+FI E  +Y M P+ VPE  VFVMGDNRNNS+DSH WG LP +N
Sbjct: 61  EVREGKLIVNGVVRNENFIFERPSYSMTPIRVPENAVFVMGDNRNNSYDSHVWGSLPAKN 120

Query: 352 IVG 354
           I+G
Sbjct: 121 ILG 123


>GSVIVT01008821001 assembled CDS
          Length = 173

 Score =  159 bits (401), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 79/136 (58%), Positives = 99/136 (72%), Gaps = 2/136 (1%)

Query: 219 SALAEPRSIPSTSMYPTLDVGDRILAEKVSYIFRKPEVSDIVIFKAPPILQEIGYGSGDV 278
           S   E   I S+SMYPTL V DR+L E+VSY FR+P + +IV F+AP  L   G+   ++
Sbjct: 28  STFTEISFIRSSSMYPTLHVQDRVLMERVSYYFRRPAIHEIVTFRAPVRLP--GHSEDEI 85

Query: 279 FIKRIVATAGDIVEVCEGKLYVNGVVQDEDFILEPLAYEMEPVLVPEGYVFVMGDNRNNS 338
           FIKR+VA AGD+VEV +G LYVNG VQ EDFILE   Y ++   VP+ +VFV+GDNRNNS
Sbjct: 86  FIKRVVARAGDLVEVRDGSLYVNGDVQTEDFILEQPNYILDLTYVPKDHVFVLGDNRNNS 145

Query: 339 FDSHNWGPLPIQNIVG 354
            DSH WGPLPI+NI+G
Sbjct: 146 SDSHEWGPLPIKNIIG 161


>GSVIVT01036964001 assembled CDS
          Length = 497

 Score = 85.5 bits (210), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 89/309 (28%), Positives = 134/309 (43%), Gaps = 37/309 (11%)

Query: 463 LLDTFKIEGPFDLRVGNQDELSLSLPLNASHTRLKRVLVGEGITVEVKGSQELSLLHTVD 522
           +L  F++ GP +L + +  ++ +SLP +     LK+V++ +G  V VKG++ +SL H +D
Sbjct: 180 VLAPFQLAGPMELWIQDAKDMRISLPHDVDAGELKKVILADGAVVTVKGARSVSLRHPID 239

Query: 523 HSFTVNGSFVISKRKTGFCAFWKPL-------CMPLHPIYVNGSASLIAYRT-------- 567
                N S   +   +G  A  + L         PL  + + G  SL +           
Sbjct: 240 LPLPFNRSN--NGFASGILALAERLRHAARTQGEPLLSLRIVGPTSLTSPSPSASSSSSN 297

Query: 568 -----RNSEAPVETTLLSKG-TIELLPAKCYTNNAYK--NHAQLNPSLSLKI------NR 613
                R +   VE +L SK  TIE LPA      A       Q      L        N 
Sbjct: 298 RLKLKRLAPGLVELSLPSKASTIETLPAVDLQEEATALLTPVQFTTMWPLAFINGSNSNL 357

Query: 614 LG--KLLRSFLSDTLRKSWNSGFLRTTVKASTIFRFQLDLEKNI--GSNTTLDGLLEDWR 669
           LG   LL S L     K  +   L+  V A T  +    +EK +  G    L+GL E WR
Sbjct: 358 LGFEALLASLLGPKASKEGSFRLLKADVSAQTFVKIGFGVEKKLKEGDGFNLEGLPE-WR 416

Query: 670 TKPTVERVWFEIMARVEAGKLRLITAKKVRPFVQVDSASWSNLMSNISFTKFPSILVPPE 729
           TKP    + FE++A+VE  K+       V P V  D+ + + L  N + +K P + VP +
Sbjct: 417 TKPKAVTMHFEVLAKVEGNKVVPERIVPVNPVVGEDTVAPNVLSGNATMSKIPIVHVPSD 476

Query: 730 ALTLD-VKW 737
             TL  V+W
Sbjct: 477 PFTLGFVEW 485


>GSVIVT01036961001 assembled CDS
          Length = 398

 Score = 73.9 bits (180), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 84/297 (28%), Positives = 126/297 (42%), Gaps = 42/297 (14%)

Query: 473 FDLRVGNQDELSLSLPLNASHTRLKRVLVGEGITVEVKGSQELSLLHTVDHSFTVNGSFV 532
            +L + +  ++ +SLP +     LK+V++ +G  V VKG++ +SL H +D     N S  
Sbjct: 1   MELWIQDAKDMRISLPHDVDAGELKKVILADGAVVTVKGARSVSLRHPIDLPLPFNRSN- 59

Query: 533 ISKRKTGFCAFWKPL-------CMPLHPIYVNGSASLIAYRT-------------RNSEA 572
            +   +G  A  + L         PL  + + G  SL +                R +  
Sbjct: 60  -NGFASGILALAERLRHAARTQGEPLLSLRIVGPTSLTSPSPSASSSSSNRLKLKRLAPG 118

Query: 573 PVETTLLSKG-TIELLPAKCYTNNAYKNHAQLNPSLSLKI-----------NRLG--KLL 618
            VE +L SK  TIE LPA      A    A L P     +           N LG   LL
Sbjct: 119 LVELSLPSKASTIETLPAVDLQEEAT---ALLTPVQFTTMWPLAFINGSNSNLLGFEALL 175

Query: 619 RSFLSDTLRKSWNSGFLRTTVKASTIFRFQLDLEKNI--GSNTTLDGLLEDWRTKPTVER 676
            S L     K  +   L+  V A T  +    +EK +  G    L+GL E WRTKP    
Sbjct: 176 ASLLGPKASKEGSFRLLKADVSAQTFVKIGFGVEKKLKEGDGFNLEGLPE-WRTKPKAVT 234

Query: 677 VWFEIMARVEAGKLRLITAKKVRPFVQVDSASWSNLMSNISFTKFPSILVPPEALTL 733
           + FE++A+VE  K+       V P V  D+ + + L  N + +K P + VP +  TL
Sbjct: 235 MHFEVLAKVEGNKVVPERIVPVNPVVGEDTVAPNVLSGNATMSKIPIVHVPSDPFTL 291


>GSVIVT01021415001 assembled CDS
          Length = 208

 Score = 57.0 bits (136), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 50/156 (32%), Positives = 74/156 (47%), Gaps = 27/156 (17%)

Query: 205 KALFTAATVSFLFKS--ALAEPRSIPSTSMYPTLDV-GDRILAEKVSYIFRKPEVSDIVI 261
           +A FTA  +  L  S   L         SM PTL++ GD ILA+++S  F K    DIV+
Sbjct: 19  RAFFTAKFLCLLHVSNTYLCTVALAHGPSMLPTLNLSGDLILADRLSVRFGKVGPGDIVL 78

Query: 262 FKAPPILQEIGYGSGDVFIKRIVATAGDIVEVCEGKLYVNGVVQDEDFILEPL-AYEMEP 320
            ++P   ++I         KR+V   GD V                 F ++P  +   E 
Sbjct: 79  VRSPQNPRKI-------ITKRVVGMGGDRVT----------------FSVDPKDSRRCET 115

Query: 321 VLVPEGYVFVMGDNRNNSFDSHNWGPLPIQNIVGSI 356
           V+VPEG+V++ GDN   S DS N+G +P   + G +
Sbjct: 116 VVVPEGHVWIAGDNIYASTDSRNFGAVPYGLLQGKV 151


>GSVIVT01033968001 assembled CDS
          Length = 170

 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 50/198 (25%), Positives = 79/198 (39%), Gaps = 48/198 (24%)

Query: 198 SFCSEDAKALFTAATVSFLFKSALAEPRSIPSTSMYPTLD----------VGDRILAEKV 247
           +F  +  K  FT   +        A    +   SMYPT +            D +L EK 
Sbjct: 5   NFLWDFGKKCFTFGLIGLTISDRYASIAHVQGLSMYPTFNPNARTFMGSLTDDYVLLEKF 64

Query: 248 SYIFRKPEVSDIVIFKAPPILQEIGYGSGDVFIKRIVATAGDIVEVCEGKLYVNGVVQDE 307
                K    D++ F++P   +E         IKRI+A  GD                  
Sbjct: 65  CLEKYKFSHGDVIAFRSPNNHREKQ-------IKRIIALPGD------------------ 99

Query: 308 DFILEPLAYEMEPVLVPEGYVFVMGDNRNNSFDSHNWGPLPIQNIVGSIEIYGLATVI-- 365
            +I  P +Y+   + +PEG+ +V GDN  +S DS ++GP+P+    G       AT I  
Sbjct: 100 -WITAPHSYDA--LRIPEGHCWVEGDNSASSLDSRSFGPVPLGLACGR------ATHIVW 150

Query: 366 --QKSVELVTLVPEKQVS 381
             Q+  E+   +P  ++S
Sbjct: 151 PPQRIGEVERRIPHDRIS 168


>GSVIVT01014071001 assembled CDS
          Length = 167

 Score = 49.7 bits (117), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 65/138 (47%), Gaps = 25/138 (18%)

Query: 221 LAEPRSIPSTSMYPTLDV-GDRILAEKVSYIFRKPEVSDIVIFKAPPILQEIGYGSGDVF 279
           +  P  +   SM PT ++ GD +L E ++    K    D+V+ ++P   ++         
Sbjct: 38  ICTPTLVYGPSMLPTFNLTGDVLLVENLTVRMGKVRPGDVVLVRSPENPRK-------TV 90

Query: 280 IKRIVATAGDIVEVCEGKLYVNGVVQDEDFILEPL-AYEMEPVLVPEGYVFVMGDNRNNS 338
            KRI+   GD V                 F+++P  +   + V++P+G+V++ GDN   S
Sbjct: 91  SKRILGMEGDRVT----------------FMIDPKNSNRCQSVVIPKGHVWIQGDNIYAS 134

Query: 339 FDSHNWGPLPIQNIVGSI 356
            DS N+GP+P   I G +
Sbjct: 135 HDSRNFGPVPYGLIQGKV 152