Jatropha Genome Database

JcCA0312681.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0312681.20 - phase: 0 
         (241 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01025660001 assembled CDS                                       228   3e-60
GSVIVT01025167001 assembled CDS                                       213   6e-56
GSVIVT01025671001 assembled CDS                                       183   6e-47
GSVIVT01025665001 assembled CDS                                       181   3e-46
GSVIVT01020616001 assembled CDS                                       180   4e-46
GSVIVT01025662001 assembled CDS                                       175   2e-44
GSVIVT01025669001 assembled CDS                                       170   7e-43
GSVIVT01025663001 assembled CDS                                       163   7e-41
GSVIVT01030085001 assembled CDS                                        67   1e-11
GSVIVT01014684001 assembled CDS                                        64   4e-11

>GSVIVT01025660001 assembled CDS
          Length = 239

 Score =  228 bits (580), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 119/215 (55%), Positives = 149/215 (69%), Gaps = 2/215 (0%)

Query: 27  PSPAPSGPTNITAILEKAGQFTTFIKLMKSTQEADQINTQLNNSNQGLTVFAPPDNAFAN 86
           P+PAPSGP NI ++L+K+G++TTFI+L+KSTQ  DQIN+QLN+ NQGLTVFAP D+AF+N
Sbjct: 27  PAPAPSGPINIVSVLKKSGKYTTFIRLLKSTQIDDQINSQLNDLNQGLTVFAPTDSAFSN 86

Query: 87  LKPGTLNSLTDQGKVQLVQFHILPSFIAMSQFQTVSNPLRTQAGNSANGEFPLNVTTSGN 146
           LKPG LNSLTDQ K QLVQFH++PSF+++ QFQTVSNPLRTQAG     +FPLN+T SGN
Sbjct: 87  LKPGMLNSLTDQQKFQLVQFHVVPSFLSIPQFQTVSNPLRTQAGG-GTAQFPLNITMSGN 145

Query: 147 QVNVTTGVDTATVANTIYTDGSLAVYQVDQVLLPLDLFGXXXXXXXXXSKPDEDTPVKSP 206
           QVN+TTG    ++ NT+YTDG LAVY++DQVLL   LF          +    D P  S 
Sbjct: 146 QVNMTTGRVNTSLTNTLYTDGQLAVYEIDQVLLAEGLFRPPAPAPPPKTSDPSDAPSGSN 205

Query: 207 AAGKTXXXXXXXXXXXXKTMVPFGIAFIAAISLKL 241
            A               K +V FG+A I  + L L
Sbjct: 206 GASDDSSDAKDRPHSAQK-LVSFGVAVIVILHLWL 239


>GSVIVT01025167001 assembled CDS
          Length = 331

 Score =  213 bits (542), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 112/157 (71%), Positives = 122/157 (77%), Gaps = 21/157 (13%)

Query: 28  SPAPSGPTNITAILEKAGQFTTFIKLMKSTQEADQINTQLNNSNQGLTVFAPPDNAFANL 87
           +PAPSGPTNIT ILEKAGQ+T  I+LMK TQ ADQINTQLNNSNQGLTVFAP DNAF+ L
Sbjct: 63  APAPSGPTNITQILEKAGQYTILIRLMKGTQVADQINTQLNNSNQGLTVFAPTDNAFSTL 122

Query: 88  KPGTLNSLTDQGKVQLVQFHILPSFIAMSQFQTVSNPLRTQAGNSANGEFPLNVTTSGNQ 147
           K GTLNSLTDQ KVQL+Q                     TQAGNS NGEFPLNVTTSGNQ
Sbjct: 123 KAGTLNSLTDQQKVQLIQ---------------------TQAGNSNNGEFPLNVTTSGNQ 161

Query: 148 VNVTTGVDTATVANTIYTDGSLAVYQVDQVLLPLDLF 184
           VNV+TG+  ATVANT+YTD  LAVYQVD+VLLPLD+F
Sbjct: 162 VNVSTGIVDATVANTVYTDNQLAVYQVDKVLLPLDIF 198


>GSVIVT01025671001 assembled CDS
          Length = 224

 Score =  183 bits (465), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 93/147 (63%), Positives = 110/147 (74%), Gaps = 23/147 (15%)

Query: 35  TNITAILEKAGQFTTFIKLMKSTQEADQINTQLNNSNQGLTVFAPPDNAFANLKPGTLNS 94
           TNITAILEKAGQ+TTFI+L+KSTQ  D+IN QLNNSNQGLT+FAP DNAF+NLK GTLNS
Sbjct: 36  TNITAILEKAGQYTTFIRLLKSTQMDDRINIQLNNSNQGLTIFAPTDNAFSNLKAGTLNS 95

Query: 95  LTDQGKVQLVQFHILPSFIAMSQFQTVSNPLRTQAGNSANGEFPLNVTTSGNQVNVTTGV 154
            TDQ K QLVQFH++ S                       G+F LN+TTSGNQVN+T+G+
Sbjct: 96  FTDQQKAQLVQFHVVNS-----------------------GDFSLNITTSGNQVNMTSGL 132

Query: 155 DTATVANTIYTDGSLAVYQVDQVLLPL 181
              +VANT+YTDG LAVYQ+DQVLLP+
Sbjct: 133 TNTSVANTVYTDGQLAVYQIDQVLLPM 159


>GSVIVT01025665001 assembled CDS
          Length = 308

 Score =  181 bits (459), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 89/154 (57%), Positives = 123/154 (79%), Gaps = 2/154 (1%)

Query: 33  GPTNITAILEKAGQFTTFIKLMKSTQEADQINTQL-NNSNQGLTVFAPPDNAFANLKPGT 91
           G +++T++L K+G+FTTFI L+KSTQ  + IN+QL   S+QG TVFAP D+AF++L+ GT
Sbjct: 23  GASDVTSVLRKSGKFTTFIGLLKSTQMDEPINSQLQKTSSQGFTVFAPTDSAFSDLQTGT 82

Query: 92  LNSLTDQGKVQLVQFHILPSFIAMSQFQTVSNPLRTQAGNSANGEFPLNVTTSGNQVNVT 151
           LNS TD+ KV+L QFHI+P+F+A+SQFQTVSNP+RT+AGN A  +FPLNV ++G QVN+T
Sbjct: 83  LNSFTDEQKVKLAQFHIIPTFLAISQFQTVSNPVRTEAGNDAV-DFPLNVVSNGTQVNIT 141

Query: 152 TGVDTATVANTIYTDGSLAVYQVDQVLLPLDLFG 185
           TG+   TV +T+Y+DG LAVY++  VLL   + G
Sbjct: 142 TGLVNTTVDSTVYSDGQLAVYEIGDVLLSPGILG 175


>GSVIVT01020616001 assembled CDS
          Length = 251

 Score =  180 bits (457), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 94/164 (57%), Positives = 118/164 (71%), Gaps = 2/164 (1%)

Query: 24  AQNPS-PAPS-GPTNITAILEKAGQFTTFIKLMKSTQEADQINTQLNNSNQGLTVFAPPD 81
           AQ PS PAPS    N+T IL+K GQF TFI+L+ +TQ  DQI  QL +S +G+TVFAP D
Sbjct: 26  AQKPSAPAPSPSHLNLTGILDKNGQFKTFIRLLATTQIGDQIKNQLKSSTEGMTVFAPTD 85

Query: 82  NAFANLKPGTLNSLTDQGKVQLVQFHILPSFIAMSQFQTVSNPLRTQAGNSANGEFPLNV 141
           NAF+NLKPGTLN+L+DQ +VQL+ +H+L  F ++    TVSNP+RTQA     G F LN 
Sbjct: 86  NAFSNLKPGTLNALSDQEQVQLILYHVLSKFYSLETLLTVSNPVRTQATGQDGGIFGLNF 145

Query: 142 TTSGNQVNVTTGVDTATVANTIYTDGSLAVYQVDQVLLPLDLFG 185
           T  GNQVNV+TG+    V N +  +  LAVYQVD+VLLPL+LFG
Sbjct: 146 TGEGNQVNVSTGIIETQVNNVLRGESPLAVYQVDKVLLPLELFG 189


>GSVIVT01025662001 assembled CDS
          Length = 454

 Score =  175 bits (443), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 88/145 (60%), Positives = 114/145 (78%), Gaps = 2/145 (1%)

Query: 36  NITAILEKAGQFTTFIKLMKSTQEADQINTQL-NNSNQGLTVFAPPDNAFANLKPGTLNS 94
           +ITA+L KAG++TTFI L+KSTQ   QIN++L   S+ G T+FAP D AF+NLKPGTLNS
Sbjct: 217 DITALLRKAGKYTTFIGLLKSTQMDVQINSELQKKSDPGFTIFAPTDTAFSNLKPGTLNS 276

Query: 95  LTDQGKVQLVQFHILPSFIAMSQFQTVSNPLRTQAGNSANGEFPLNVTTSGNQVNVTTGV 154
            TDQ K  L QFH++PS+++ SQFQTVSNPLRT+AG     EFPLN+TT+G QV++TTG+
Sbjct: 277 FTDQQKAALTQFHVVPSYLSNSQFQTVSNPLRTEAGGDT-VEFPLNITTNGTQVSMTTGL 335

Query: 155 DTATVANTIYTDGSLAVYQVDQVLL 179
              TV +T+Y DG LAVY++ +VLL
Sbjct: 336 VNTTVDDTVYIDGQLAVYEIGEVLL 360



 Score =  111 bits (277), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 55/94 (58%), Positives = 71/94 (75%), Gaps = 1/94 (1%)

Query: 86  NLKPGTLNSLTDQGKVQLVQFHILPSFIAMSQFQTVSNPLRTQAGNSANGEFPLNVTTSG 145
           +LK GTLNS TD+ K  L +FH+L SF+ +SQFQTVSNPL T+A  +   EFPLNV  +G
Sbjct: 53  DLKTGTLNSYTDEQKAALTKFHVLHSFLTISQFQTVSNPLHTEAAANTE-EFPLNVIGNG 111

Query: 146 NQVNVTTGVDTATVANTIYTDGSLAVYQVDQVLL 179
            QVN+TTG+   TV +T+Y+DG LAVY++ QVLL
Sbjct: 112 TQVNITTGLVNTTVDSTVYSDGQLAVYEISQVLL 145


>GSVIVT01025669001 assembled CDS
          Length = 259

 Score =  170 bits (430), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 86/144 (59%), Positives = 112/144 (77%), Gaps = 3/144 (2%)

Query: 36  NITAILEKAGQFTTFIKLMKSTQEADQINTQLNNSNQGLTVFAPPDNAFANLKPGTLNSL 95
           +ITAIL KAG+FTTFI L+KSTQ  D IN QL  +N G T+FAP D+AF++LK GTLNS 
Sbjct: 53  DITAILRKAGKFTTFIGLLKSTQVDDLINNQLK-ANLGFTIFAPTDSAFSDLKSGTLNSF 111

Query: 96  TDQGKVQLVQFHILPSFIAMSQFQTVSNPLRTQAGNSANGEFPLNVTTSGNQVNVTTGVD 155
           TD+ K  L +FHI+PSF+ +SQFQTVSNP+ T AG+S   EFPLNV ++G QVN+TTG+ 
Sbjct: 112 TDEQKTALTKFHIVPSFLTISQFQTVSNPVNTVAGDSV--EFPLNVISNGTQVNITTGLV 169

Query: 156 TATVANTIYTDGSLAVYQVDQVLL 179
             T  +T+++DG LAVY++ +VLL
Sbjct: 170 NTTADSTVHSDGQLAVYEIGEVLL 193


>GSVIVT01025663001 assembled CDS
          Length = 259

 Score =  163 bits (412), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 93/177 (52%), Positives = 118/177 (66%), Gaps = 21/177 (11%)

Query: 23  YAQNPSPA--PSGPT-----------------NITAILEKAGQFTTFIKLMKSTQEADQI 63
           Y Q+ +PA  PSG T                 +I  IL KAG+FTTFI L+KSTQ   QI
Sbjct: 23  YGQSLAPAAGPSGATTTSGQSSPPTSSPSGPTDINVILGKAGKFTTFIGLLKSTQMDSQI 82

Query: 64  NTQL-NNSNQGLTVFAPPDNAFANLKPGTLNSLTDQGKVQLVQFHILPSFIAMSQFQTVS 122
           N++L   SN G T+FAP D+AF++LK GTLNS TD+ K  L +FH+L SF+ +SQFQTVS
Sbjct: 83  NSELQKKSNPGFTIFAPTDSAFSDLKTGTLNSYTDEQKAALTKFHVLHSFLTISQFQTVS 142

Query: 123 NPLRTQAGNSANGEFPLNVTTSGNQVNVTTGVDTATVANTIYTDGSLAVYQVDQVLL 179
           NPL T+A  +   EFPLNV  +G QVN+TTG+   TV +T+Y+DG LAVY+  QVLL
Sbjct: 143 NPLHTEAAANTE-EFPLNVIGNGTQVNITTGLVNTTVDSTVYSDGQLAVYETPQVLL 198


>GSVIVT01030085001 assembled CDS
          Length = 482

 Score = 66.6 bits (161), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 46/148 (31%), Positives = 75/148 (50%), Gaps = 5/148 (3%)

Query: 37  ITAILEKAGQFTTFIKLMKSTQEADQINTQLNNSNQGLTVFAPPDNAFANLKPGTLNSLT 96
           I+ IL  A     F  L++++     I T   N++ GLTVF P D+      P   N LT
Sbjct: 282 ISQILTSAQGCKAFGDLLEAS---GAIKTFEENADGGLTVFCPSDDVIKGFMPKYKN-LT 337

Query: 97  DQGKVQLVQFHILPSFIAMSQFQTVSNPLRTQAGNSANGEFPLNVTTSGNQVNVTTGVDT 156
             GKV L+ +H +P + +M   ++ +    T A + A  ++   V T G  + + T V T
Sbjct: 338 AAGKVSLLLYHGIPIYQSMQMLKSSNGVTNTLATDGAK-KYDFTVQTEGEDITLETKVVT 396

Query: 157 ATVANTIYTDGSLAVYQVDQVLLPLDLF 184
           A V  T+     + +Y++++VLLP +LF
Sbjct: 397 ARVTGTVLDQEPVVLYKINKVLLPRELF 424


>GSVIVT01014684001 assembled CDS
          Length = 405

 Score = 64.3 bits (155), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 81/161 (50%), Gaps = 13/161 (8%)

Query: 24  AQNPSPAPSGPTNITAILEKAGQFTTFIKLMKSTQEADQINTQLNNSNQGLTVFAPPDNA 83
           A   +P  SG  NIT +  K G+   F +   +T E        +N   GLTVF P D+ 
Sbjct: 177 ATGSAPGSSGFVNITDL--KGGK-VGFDQQDPATYE--------DNLEGGLTVFCPMDDV 225

Query: 84  FANLKPGTLNSLTDQGKVQLVQFHILPSFIAMSQFQTVSNPLRTQAGNSANGEFPLNVTT 143
           F +  P   N LT  GK+ L+ +H +P + ++S  ++ +  + T A + A  ++   V  
Sbjct: 226 FKSFLPKYKN-LTADGKLSLLLYHGIPVYQSLSLLKSSNGVMNTLATDGAK-KYDFTVQN 283

Query: 144 SGNQVNVTTGVDTATVANTIYTDGSLAVYQVDQVLLPLDLF 184
            G  V + T + TA +  T+  +  L ++ +D+VLLP +LF
Sbjct: 284 DGEVVTLKTKIVTARITGTLLDEQPLGIFTIDKVLLPKELF 324