Jatropha Genome Database

JcCA0312671.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0312671.10 + phase: 1 /pseudo/partial
         (346 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01012696001 assembled CDS                                       237   6e-63
GSVIVT01037680001 assembled CDS                                       200   7e-52
GSVIVT01016812001 assembled CDS                                        54   1e-07
GSVIVT01034677001 assembled CDS                                        54   2e-07
GSVIVT01015168001 assembled CDS                                        51   1e-06

>GSVIVT01012696001 assembled CDS
          Length = 562

 Score =  237 bits (605), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 137/228 (60%), Positives = 156/228 (68%), Gaps = 30/228 (13%)

Query: 56  LREITTLVQSEYLFGFKSRSFSSDSGDLVDAVVPFMGESITDGTLAKFLKKPGDRVEVDE 115
           +RE+T+ +Q +     + R FSSD GDLVDAVVPFMGESI+DGTLAKFLKKPGD VEVDE
Sbjct: 161 VREVTSFLQIDSPIQVQHRPFSSDKGDLVDAVVPFMGESISDGTLAKFLKKPGDHVEVDE 220

Query: 116 PIAQIETDKVTIDVASPEAGTIQKLVAKEGETVEPGTKIAVISKSGXXXXXXXXXXXXXX 175
           PIAQIETDKVTIDVASPEAG +QK VAKEG+ VEPGTKIAVISKSG              
Sbjct: 221 PIAQIETDKVTIDVASPEAGVVQKFVAKEGDVVEPGTKIAVISKSG-------------- 266

Query: 176 XXXXXXXXXSGGKQTPAVDS-GPIKDSKRAPSAPQPPVKT------------PSSAPKPT 222
                    +  ++TP+  S  P    K A   P+P  +T            P   P  T
Sbjct: 267 ---EGVTHVAPSEKTPSKASPEPSPTEKEAVDKPKPKSETPPPKEKPKAPAPPPPRPSAT 323

Query: 223 EPQLPPKDRERRVPMTRLRKRVATRLKDSQNTFAMLTTFNEVDISVLI 270
           EP LPPK+RERRVPMTRLRKRVATRLKDSQNTFAMLTTFNEVD++ L+
Sbjct: 324 EPVLPPKERERRVPMTRLRKRVATRLKDSQNTFAMLTTFNEVDMTNLM 371


>GSVIVT01037680001 assembled CDS
          Length = 392

 Score =  200 bits (509), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 116/210 (55%), Positives = 132/210 (62%), Gaps = 21/210 (10%)

Query: 71  FKSRSFSSDSGDLVDAVVPFMGESITDGTLAKFLKKPGDRVEVDEPIAQIETDKVTIDVA 130
            +SR FSSD+GDLVDAVVPFMGE I+DG LAKFLK  GDRV+VDEPIAQIE DKVTIDVA
Sbjct: 3   MQSRHFSSDNGDLVDAVVPFMGEYISDGILAKFLKNAGDRVQVDEPIAQIEIDKVTIDVA 62

Query: 131 SPEAGTIQKLVAKEGETVEPGTKIAVISKSGXXXXXXXXXXXXXXXXXXXXXXXSGGKQT 190
           S +AG IQK VAKEG+ V+PGTKIAVISKSG                       +     
Sbjct: 63  SLKAGVIQKFVAKEGDVVDPGTKIAVISKSGESVTHVASSKKKLDEAAPKPPPAA----- 117

Query: 191 PAVDSGPIKDSKRAPSAPQPPV-------KTPSSAPKPTEPQLPPKDRERR---VPMTRL 240
                  IK+  +       PV        +P      +EP LPPK+RERR   VPMTRL
Sbjct: 118 ------EIKNENKKSKPETAPVMGKPKVPPSPPPKQSASEPVLPPKERERRISLVPMTRL 171

Query: 241 RKRVATRLKDSQNTFAMLTTFNEVDISVLI 270
           RKRVA  LKDSQNTFAML TFNE D++ L+
Sbjct: 172 RKRVAMHLKDSQNTFAMLKTFNEFDMTNLM 201


>GSVIVT01016812001 assembled CDS
          Length = 555

 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 53/86 (61%), Gaps = 3/86 (3%)

Query: 74  RSFSSDSGDLVDAVV--PFMGESITDGTLAKFLKKPGDRVEVDEPIAQIETDKVTIDVAS 131
           R FSSDSG      +  P +  ++T+G +A++LKK GD++   E + ++ETDK T+++  
Sbjct: 116 RGFSSDSGLPAHQKIGMPSLSPTMTEGNIARWLKKEGDKISPGEVLCEVETDKATVEMEC 175

Query: 132 PEAGTIQKLVAKEG-ETVEPGTKIAV 156
            E G + K++  +G + ++ G  IA+
Sbjct: 176 MEEGYLAKIIQGDGAKEIKVGEVIAI 201


>GSVIVT01034677001 assembled CDS
          Length = 659

 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/70 (41%), Positives = 45/70 (64%), Gaps = 1/70 (1%)

Query: 88  VPFMGESITDGTLAKFLKKPGDRVEVDEPIAQIETDKVTIDVASPEAGTIQKLVAKEG-E 146
           +P +  ++  G +AK+ KK GD++EV + I +IETDK T++  S E G + K+VA EG +
Sbjct: 238 MPALSPTMNQGNIAKWRKKEGDKIEVGDVICEIETDKATLEFESLEEGYLAKIVAPEGSK 297

Query: 147 TVEPGTKIAV 156
            V  G  IA+
Sbjct: 298 DVAVGQPIAI 307



 Score = 48.1 bits (113), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 43/70 (61%), Gaps = 1/70 (1%)

Query: 88  VPFMGESITDGTLAKFLKKPGDRVEVDEPIAQIETDKVTIDVASPEAGTIQKLVAKEGET 147
           +P +  ++T G +AK+ KK GD++E  + + +IETDK T++  S E G + K++  EG  
Sbjct: 112 MPALSPTMTQGNIAKWRKKEGDKIEPGDVLCEIETDKATLEFESLEEGFLAKILVAEGSK 171

Query: 148 VEP-GTKIAV 156
             P G  IA+
Sbjct: 172 DVPVGQPIAI 181


>GSVIVT01015168001 assembled CDS
          Length = 547

 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 54/86 (62%), Gaps = 3/86 (3%)

Query: 74  RSFSSDSG--DLVDAVVPFMGESITDGTLAKFLKKPGDRVEVDEPIAQIETDKVTIDVAS 131
           R F++D+G     +  +P +  ++T+G +A++LKK GD++   E + ++ETDK T+++  
Sbjct: 112 RGFATDAGLPPHQEIGMPSLSPTMTEGNIARWLKKEGDKISPGEVLCEVETDKATVEMEC 171

Query: 132 PEAGTIQKLVAKEG-ETVEPGTKIAV 156
            E G + K+V  +G + ++ G  IA+
Sbjct: 172 MEEGYLAKIVLGDGAKEIKVGQVIAI 197