Jatropha Genome Database

JcCA0312651.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0312651.10 + phase: 0 /partial
         (357 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01025241001 assembled CDS                                       308   2e-84

>GSVIVT01025241001 assembled CDS
          Length = 654

 Score =  308 bits (790), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 178/341 (52%), Positives = 223/341 (65%), Gaps = 18/341 (5%)

Query: 18  QRRSRHKCIEVRNCGNFDKQAHLLQRRLEKFAGESDEACVKEIQEMAEASLSIKXXXXXX 77
           QR S  K  EV+ C NFDKQ  LLQRRLEK  G SD+ CVKEIQE+AEASLSI       
Sbjct: 190 QRSSDAKDFEVKKCSNFDKQTSLLQRRLEKLGGISDK-CVKEIQEIAEASLSINTSCSVG 248

Query: 78  XXXXXX---XXXANMEILRKKMEGLSKEHLLERMEEECGPMLSTANTSGSSSVANCKRIE 134
                        ++EILR+KMEGLS+  LLERM+EE G MLST N S +SS +  +RIE
Sbjct: 249 KSSVSNRRCNKFMDVEILRRKMEGLSRGVLLERMKEEYGSMLSTENCSIASSASTSRRIE 308

Query: 135 LQEMSSSSMRPQSKERKLYEERACSGCCKAIVQRVVEQVRAETEQWSQMQEMLGQVRDEM 194
             + SSS +    +E   +EE  CSG CK IV+R++EQVR ETEQWSQMQEML QVR+EM
Sbjct: 309 APDSSSSPVPKPHQETVSHEEHGCSGRCKVIVRRIMEQVRTETEQWSQMQEMLEQVREEM 368

Query: 195 EELQASRDFWEDRALDSDYQIQSLQSAVKEWRRKAVSSEAKANELQAQVMXXXXXXXXXX 254
           EEL ASRDFWEDRALDS+  IQ L S V+EW++KA+SS  KANELQAQV           
Sbjct: 369 EELNASRDFWEDRALDSECLIQYLHSDVEEWKQKALSSNDKANELQAQVFILSEEINNLR 428

Query: 255 XXXXXXTIRTKNQKLNPHTESPNEMEKRVLVCRLKENRQANCGDGSKQKEMFADGRKKSH 314
                   RT  Q         NE +KR+LVC +KEN QAN     +++++ ++GR+K++
Sbjct: 429 KEQNKEATRTTAQ---------NETDKRLLVCHMKENHQANSNSTMQKEQVLSEGRRKTY 479

Query: 315 SLNAS----KRSPFREIGNSSSPLSRQNSRAVFPLRCSIPS 351
           + +A+    +RSPFREIGN  +P+ RQNS+A+FPL C  PS
Sbjct: 480 TPSAALLPPRRSPFREIGN-LAPMLRQNSKAIFPLHCPEPS 519