Jatropha Genome Database

JcCA0312381.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0312381.20 + phase: 0 
         (234 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01035981001 assembled CDS                                       352   7e-98
GSVIVT01019766001 assembled CDS                                       251   2e-67
GSVIVT01010737001 assembled CDS                                       247   3e-66
GSVIVT01019765001 assembled CDS                                       238   1e-63
GSVIVT01011101001 assembled CDS                                       230   5e-61

>GSVIVT01035981001 assembled CDS
          Length = 207

 Score =  352 bits (904), Expect = 7e-98,   Method: Compositional matrix adjust.
 Identities = 174/207 (84%), Positives = 186/207 (89%), Gaps = 1/207 (0%)

Query: 29  IPSMKTSFGPSKSAFLQHGFSLQLPNFPGFLSKTH-SFAVYARAATEKTIHDYTVKDIDG 87
           +PS K+SFG S SAFL+ GFSL     PG   K+  S  VYARAATEK+++DYTVKDI+ 
Sbjct: 1   MPSTKSSFGASNSAFLRTGFSLCSSEIPGVSLKSRFSGGVYARAATEKSLYDYTVKDIEK 60

Query: 88  NGVPLSKFKGKVLLIVNVASKCGLTASNYTELSHIYEKYKTQGFEILAFPCNQFGGQEPG 147
             VPLSKFKGKVLLIVNVASKCGLTASNY+ELSHIYEKYKTQGFEILAFPCNQFGGQEPG
Sbjct: 61  KDVPLSKFKGKVLLIVNVASKCGLTASNYSELSHIYEKYKTQGFEILAFPCNQFGGQEPG 120

Query: 148 SNPEIKQFACTRYKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLIKWNFEKFLVDK 207
           SNPEIKQFACTR+KAEFPIFDKVDVNGP TAPVYQFLKS+AGGFLGDLIKWNFEKFLVDK
Sbjct: 121 SNPEIKQFACTRFKAEFPIFDKVDVNGPTTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDK 180

Query: 208 NGKVVERYPPTTSPFQIEKDIQKLLAA 234
           NGKVVERY PTTSPFQIEKDIQ+LLAA
Sbjct: 181 NGKVVERYQPTTSPFQIEKDIQRLLAA 207


>GSVIVT01019766001 assembled CDS
          Length = 168

 Score =  251 bits (641), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 116/165 (70%), Positives = 136/165 (82%)

Query: 69  ARAATEKTIHDYTVKDIDGNGVPLSKFKGKVLLIVNVASKCGLTASNYTELSHIYEKYKT 128
           A  ++ +++H +TVKD  GN V LS +KGK LLIVNVAS+CGLT SNYTEL  +YEKYK 
Sbjct: 2   ASQSSPQSVHSFTVKDARGNDVDLSIYKGKALLIVNVASQCGLTNSNYTELHQLYEKYKD 61

Query: 129 QGFEILAFPCNQFGGQEPGSNPEIKQFACTRYKAEFPIFDKVDVNGPNTAPVYQFLKSSA 188
           QG EILAFPCNQFG QEPGSN EI++F CTR+KAE+PIFDK+DVNG + AP+Y+FLKSS 
Sbjct: 62  QGLEILAFPCNQFGAQEPGSNEEIEKFVCTRFKAEYPIFDKIDVNGDSAAPLYKFLKSSK 121

Query: 189 GGFLGDLIKWNFEKFLVDKNGKVVERYPPTTSPFQIEKDIQKLLA 233
           GG  GD IKWNF KFLVDK+GKVV+RY PTTSP  IEKDI+KLL 
Sbjct: 122 GGLFGDNIKWNFSKFLVDKDGKVVDRYAPTTSPLSIEKDIKKLLG 166


>GSVIVT01010737001 assembled CDS
          Length = 167

 Score =  247 bits (631), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 119/163 (73%), Positives = 135/163 (82%)

Query: 72  ATEKTIHDYTVKDIDGNGVPLSKFKGKVLLIVNVASKCGLTASNYTELSHIYEKYKTQGF 131
           A  K+I+D+TVKDI GN V LS + GKVLLIVNVASKCGLT SNY EL+ +YEKYK+QGF
Sbjct: 4   AAPKSIYDFTVKDIRGNDVSLSDYNGKVLLIVNVASKCGLTHSNYKELNVLYEKYKSQGF 63

Query: 132 EILAFPCNQFGGQEPGSNPEIKQFACTRYKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGF 191
           EILAFPCNQF GQEPGSN EI + ACT +KAEFPIFDKV+VNG NTAP+Y+FLK   GG 
Sbjct: 64  EILAFPCNQFLGQEPGSNEEILEAACTMFKAEFPIFDKVEVNGKNTAPLYKFLKLQKGGL 123

Query: 192 LGDLIKWNFEKFLVDKNGKVVERYPPTTSPFQIEKDIQKLLAA 234
            GD IKWNF KFLVDK GKVV+RY PTTSP +IE+DIQ LL +
Sbjct: 124 FGDGIKWNFTKFLVDKEGKVVDRYAPTTSPLKIEEDIQNLLGS 166


>GSVIVT01019765001 assembled CDS
          Length = 170

 Score =  238 bits (608), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 109/160 (68%), Positives = 132/160 (82%)

Query: 75  KTIHDYTVKDIDGNGVPLSKFKGKVLLIVNVASKCGLTASNYTELSHIYEKYKTQGFEIL 134
           ++I+D+TVKD +G  V LS +KGKVLLIVNVASKCGLT SNYTEL+ +YEKYK QG EIL
Sbjct: 10  ESIYDFTVKDAEGKSVNLSIYKGKVLLIVNVASKCGLTNSNYTELNQLYEKYKDQGLEIL 69

Query: 135 AFPCNQFGGQEPGSNPEIKQFACTRYKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGD 194
           AFPCNQFG +EPGSN +I +F CTR+K+EFP+FDK+DVNG N AP+Y+FLKS   G  GD
Sbjct: 70  AFPCNQFGEEEPGSNEQILEFVCTRFKSEFPVFDKIDVNGENAAPLYKFLKSGKWGIFGD 129

Query: 195 LIKWNFEKFLVDKNGKVVERYPPTTSPFQIEKDIQKLLAA 234
            I+WNF KFLVDKNGK+V+RY PTTSP  +E D++KLL  
Sbjct: 130 DIQWNFGKFLVDKNGKIVDRYYPTTSPLTVENDVKKLLEV 169


>GSVIVT01011101001 assembled CDS
          Length = 170

 Score =  230 bits (586), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 107/165 (64%), Positives = 130/165 (78%)

Query: 69  ARAATEKTIHDYTVKDIDGNGVPLSKFKGKVLLIVNVASKCGLTASNYTELSHIYEKYKT 128
           +++ +EK+IH++ VKD     V LS +KGKVLL+VNVASKCGLT SNYT+L+ +Y KYK 
Sbjct: 4   SQSGSEKSIHEFRVKDYKAKDVDLSVYKGKVLLVVNVASKCGLTDSNYTQLTELYNKYKD 63

Query: 129 QGFEILAFPCNQFGGQEPGSNPEIKQFACTRYKAEFPIFDKVDVNGPNTAPVYQFLKSSA 188
           +GFEILAFPCNQF  QEPGS+ + ++FACTRYKAE+PIF KV VNGP+ APVY+FLK+  
Sbjct: 64  RGFEILAFPCNQFLKQEPGSSEQAQEFACTRYKAEYPIFHKVRVNGPDAAPVYKFLKAHK 123

Query: 189 GGFLGDLIKWNFEKFLVDKNGKVVERYPPTTSPFQIEKDIQKLLA 233
            GFLG  IKWNF KFLVDK G V+ RY PTT+P  IE DIQK L 
Sbjct: 124 SGFLGSRIKWNFTKFLVDKEGTVLARYGPTTAPLTIEADIQKALG 168