Jatropha Genome Database

JcCA0312361.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0312361.20 - phase: 1 /pseudo/partial
         (478 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01007978001 assembled CDS                                       362   e-100
GSVIVT01003228001 assembled CDS                                       317   1e-86

>GSVIVT01007978001 assembled CDS
          Length = 524

 Score =  362 bits (929), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 172/236 (72%), Positives = 199/236 (84%)

Query: 1   GLSNSARVAQGKLLGGLLANGFNEETCISRYQSVSYRKELPHKPSSYLISSLRNYEALHK 60
            LS SA   + KLLGGLL  GFNE +C+SRYQS  YRKEL HKPSSYL+S LR+YEALHK
Sbjct: 86  NLSWSAEEPKDKLLGGLLDAGFNERSCLSRYQSALYRKELLHKPSSYLLSKLRSYEALHK 145

Query: 61  KCGPHTESYKMAVEQLKSGNNPESSDCSYLVWISFSGLGNRILTLASAFLYALVTNRVLL 120
           +CGP+TESY   ++QL+ G + E SDC+YLVWISFSGLGNRILTLASAFLYA++TNRVLL
Sbjct: 146 RCGPYTESYNRTLKQLQLGQHMEQSDCNYLVWISFSGLGNRILTLASAFLYAILTNRVLL 205

Query: 121 IDPGVDMADLFCEPFPDVFWFLPLDFPLKGQFNSFNQRSPACYGRMLKDSNSTNLHRLMP 180
           +DPG DM DLFCEPFP+V W LPLDFPLK +FNSF+Q+SP CYG+MLK+   T+    + 
Sbjct: 206 VDPGADMPDLFCEPFPEVSWLLPLDFPLKNEFNSFDQKSPFCYGKMLKNKTLTDSSWSIL 265

Query: 181 PIYVYLHLVHDYDDQDKLFFCDEDQAFLRKIPWLIIKTDNYFVPSLFLIPSFEQEL 236
           P YVYLHLVHDYDD DK+FFC++DQ+FLRKIP LIIKTDNYFVPSLFLIPSFEQEL
Sbjct: 266 PPYVYLHLVHDYDDHDKMFFCNQDQSFLRKIPCLIIKTDNYFVPSLFLIPSFEQEL 321


>GSVIVT01003228001 assembled CDS
          Length = 474

 Score =  317 bits (811), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 161/255 (63%), Positives = 199/255 (78%), Gaps = 2/255 (0%)

Query: 3   SNSARVAQGKLLGGLLANGFNEETCISRYQSVSYRKELPHKPSSYLISSLRNYEALHKKC 62
           S  A +++  LLGGLLA GF E++C+SRYQS  YRK  P+KPSSYL+S LR YE LHK C
Sbjct: 74  SQPADMSKDSLLGGLLAAGFGEKSCLSRYQSALYRKISPYKPSSYLLSRLRKYEDLHKHC 133

Query: 63  GPHTESYKMAVEQLKSGNNPESSDCSYLVWISFSGLGNRILTLASAFLYALVTNRVLLID 122
           GPHT+SY+  ++ LKSG++   +DC+Y+VWIS+SGLGNRILTLASAFLYAL+TNRVLL+D
Sbjct: 134 GPHTKSYRKTIKLLKSGHSVGPTDCNYVVWISYSGLGNRILTLASAFLYALLTNRVLLVD 193

Query: 123 PGVDMADLFCEPFPDVFWFLPLDFPLKGQFNSFNQRSPACYGRMLKDSNSTNLHRLMPPI 182
            G DMADLFCEPFP+  W LPLDFPL  +FNS N+ SP C+G+MLK+ N  N     PP 
Sbjct: 194 RGKDMADLFCEPFPEKSWLLPLDFPLLPKFNSINKESPHCFGKMLKN-NIINSSTEQPPP 252

Query: 183 YVYLHLVHDYDDQDKLFFCDEDQAFLRKIPWLIIKTDNYFVPSLFLIPSFEQELNNLFPN 242
           ++Y++L HDY D DKLFFCD++Q  L K+PWLI+KT+NYFVPSLFL+PSFEQEL+ LFP 
Sbjct: 253 FLYIYLSHDYGDHDKLFFCDQEQTLLGKVPWLIMKTNNYFVPSLFLMPSFEQELSKLFPE 312

Query: 243 KE-SFSLLGSISLSP 256
           KE +F  LG     P
Sbjct: 313 KETTFHHLGRYLFHP 327