Jatropha Genome Database

JcCA0312361.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0312361.10 + phase: 0 
         (145 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01007979001 assembled CDS                                       215   6e-57
GSVIVT01018801001 assembled CDS                                        59   6e-10
GSVIVT01037292001 assembled CDS                                        50   5e-07

>GSVIVT01007979001 assembled CDS
          Length = 175

 Score =  215 bits (547), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 100/106 (94%), Positives = 105/106 (99%)

Query: 40  LGTCTYVKARHILCEKQGKINEAYQKLQDGWLNNGDKVPPAEFAKLAAEYSECPSGKKGG 99
           LGTCTYVKARHILCEKQGKINEAY+KLQDGWL+NGDKVPPAEFAKLAAEYSECPSGKKGG
Sbjct: 70  LGTCTYVKARHILCEKQGKINEAYKKLQDGWLSNGDKVPPAEFAKLAAEYSECPSGKKGG 129

Query: 100 DLGWFPRGKMAGPFQEVAFNTPIGATSAPFKSTHGYHVILCEGRKN 145
           DLGWFPRGKMAGPFQ+VAF+T IGATSAPFKSTHGYH+ILCEGRKN
Sbjct: 130 DLGWFPRGKMAGPFQDVAFSTVIGATSAPFKSTHGYHIILCEGRKN 175


>GSVIVT01018801001 assembled CDS
          Length = 118

 Score = 59.3 bits (142), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 40/63 (63%)

Query: 80  AEFAKLAAEYSECPSGKKGGDLGWFPRGKMAGPFQEVAFNTPIGATSAPFKSTHGYHVIL 139
           ++F+ +A++ S+C S K+GGDLG F RG+M  PF+E  +   +G  S   ++  G H+I+
Sbjct: 56  SKFSDVASQISDCSSAKRGGDLGPFGRGQMQKPFEEATYALKVGEISDIVETDSGVHIIM 115

Query: 140 CEG 142
             G
Sbjct: 116 RTG 118


>GSVIVT01037292001 assembled CDS
          Length = 296

 Score = 49.7 bits (117), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 1/59 (1%)

Query: 80  AEFAKLAAEYSECPSGKKGGDLGWFPRGKMAGPFQEVAFNTPIGATSAPFKSTHGYHVI 138
            + + LA EYS CPS ++GG LGW  +G+M   F+E AF  P+       K+  G+H++
Sbjct: 117 VDLSDLAVEYSICPSKEEGGMLGWVRKGQMVPEFEEAAFKAPLNKVVR-CKTKFGWHLL 174