Jatropha Genome Database

JcCA0312321.40
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0312321.40 + phase: 0 
         (207 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01033550001 assembled CDS                                       112   1e-25

>GSVIVT01033550001 assembled CDS
          Length = 381

 Score =  112 bits (280), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 45/94 (47%), Positives = 67/94 (71%)

Query: 23  IPAWEKQFCFAVGGIRWQDFLRAKKYASEFTKIMEWDDSAGKESFYNAKSRFWAKNGGLP 82
           +P+WEK+FC +VG   WQ  L  K++   +  +++W+DSAG+E+F+NAK+RFWA+  GLP
Sbjct: 34  VPSWEKKFCSSVGSFSWQRLLENKRFIYLYDNVLQWNDSAGEEAFHNAKNRFWAQINGLP 93

Query: 83  FKTPLPSPDIYIDRIDWTAKLDSQLLLDLEKARI 116
               LP PDIYID IDW   +D +++LDLE+  +
Sbjct: 94  CDISLPDPDIYIDEIDWNCSIDPEMILDLEREPV 127