Jatropha Genome Database

JcCA0312321.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0312321.30 + phase: 0 
         (425 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01031546001 assembled CDS                                       682   0.0  
GSVIVT01003967001 assembled CDS                                        65   5e-11

>GSVIVT01031546001 assembled CDS
          Length = 422

 Score =  682 bits (1759), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 330/425 (77%), Positives = 369/425 (86%), Gaps = 3/425 (0%)

Query: 1   MARALFHLKSASVMACAKQSNHDNSRVQLLEKNRNAKXXXXXXXXXXXXSTAIALSKLCP 60
           MA A  HL S +V+A  ++   +  RV L EK  N +            STAIALSKLCP
Sbjct: 1   MAGASLHLNSTTVLASLQE---NQPRVHLPEKTANRRVLVLGGTGRVGGSTAIALSKLCP 57

Query: 61  DLRIVIGGRNREKGAAMVAKLGKNSDFVEVNIDNVDSLEAALSDVDLVVHAAGPFQQAEK 120
           DLRI +GGRNREKGAAM+AKLG+NS+F EVNIDNV SLEAAL+DVDLV+H AGPFQQAEK
Sbjct: 58  DLRITVGGRNREKGAAMLAKLGENSEFAEVNIDNVKSLEAALNDVDLVIHTAGPFQQAEK 117

Query: 121 CSVLEAAIETKTAYVDVCDDTNYALRAKSFKDRALAADIPAITTGGIYPGVSNVMAAELV 180
           C+VLEAAIETKTAYVDVCDDT YA RAKS  ++AL+A++PAITTGGIYPGVSNVMAAELV
Sbjct: 118 CTVLEAAIETKTAYVDVCDDTTYAWRAKSLLEKALSANVPAITTGGIYPGVSNVMAAELV 177

Query: 181 RAARTESKGKPDRLRFXXXXXXXXXXXPTILATSFLLLGEEVVAYNKGEKIKLKPFSGML 240
           R AR+ES+GKP+RLRF           PTILATSFLLLGEEVVAYNKGEKIKLKP+SGML
Sbjct: 178 RVARSESQGKPERLRFYYYTAGTGGAGPTILATSFLLLGEEVVAYNKGEKIKLKPYSGML 237

Query: 241 NIDFGKGIGKRDVYLLNLPEVRSAYEVLGIPTVSARFGTAPFFWNWGMEVMTNLLPPEFL 300
           NIDFGKGIGKRDVYLL+LPEVRSA+E+LG+PTVSARFGTAPFFWNWGME MTNLLP EFL
Sbjct: 238 NIDFGKGIGKRDVYLLHLPEVRSAHEILGVPTVSARFGTAPFFWNWGMEAMTNLLPVEFL 297

Query: 301 RDRSKVQELVQLFDPLVRAVDGIAGERVSMRVDLECTDGRNTVAIFTHQRLSVSVGNATA 360
           RDRSKVQELVQLFDP+VRA+DGIAGERVSMRVDLEC+DGRNTV +F+H+RLSVSVG ATA
Sbjct: 298 RDRSKVQELVQLFDPIVRAMDGIAGERVSMRVDLECSDGRNTVGLFSHRRLSVSVGFATA 357

Query: 361 AFVLAVLEGSTQPGVWFPEEPEGIIIDAREVLLQRAAEGTINFVINKPPWMVETEPKLLG 420
           AF LAVLEGSTQPGVWFPEEPEGI IDAR++LL+RAA+GTINF++NKPPWMVET+PK LG
Sbjct: 358 AFALAVLEGSTQPGVWFPEEPEGIAIDARDILLKRAAQGTINFIMNKPPWMVETDPKELG 417

Query: 421 LGIYV 425
           LGIYV
Sbjct: 418 LGIYV 422


>GSVIVT01003967001 assembled CDS
          Length = 409

 Score = 65.5 bits (158), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 30/51 (58%), Positives = 39/51 (76%)

Query: 125 EAAIETKTAYVDVCDDTNYALRAKSFKDRALAADIPAITTGGIYPGVSNVM 175
           + AIE K AYVDV DDT YA RAKS  ++AL+A++PA+TTG IY G  N++
Sbjct: 12  QTAIEIKAAYVDVRDDTTYAWRAKSLLEKALSANVPAVTTGRIYSGHMNII 62