Jatropha Genome Database

JcCA0312091.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0312091.10 - phase: 0 /partial
         (145 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01024577001 assembled CDS                                       106   4e-24
GSVIVT01030201001 assembled CDS                                       102   5e-23
GSVIVT01027083001 assembled CDS                                       100   2e-22
GSVIVT01028706001 assembled CDS                                        91   2e-19
GSVIVT01032698001 assembled CDS                                        87   3e-18
GSVIVT01001781001 assembled CDS                                        71   2e-13

>GSVIVT01024577001 assembled CDS
          Length = 929

 Score =  106 bits (264), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 56/109 (51%), Positives = 72/109 (66%), Gaps = 2/109 (1%)

Query: 33  WLMAXXXXXXXXXXXXPTLASEQKRKEVIDYIRRLIKGYYATEVFPSGSVPLKTYLPDGD 92
           W  A            PTL S ++R+EVIDY++RLI      EVFP GSVPLKTYL DGD
Sbjct: 40  WAAAERATQEIVAKMQPTLGSMRERQEVIDYVQRLIGCCLGCEVFPYGSVPLKTYLLDGD 99

Query: 93  IDLTVLSYQNMEEDLAREVYNMLKYEEQHPMS--EVKDVQYIQAQVKIL 139
           IDLT L   N+EE LA +V+ +LK EEQ+  +  EVKD+Q+I A+VK++
Sbjct: 100 IDLTALCSSNVEEALASDVHAVLKGEEQNENAEFEVKDIQFITAEVKLV 148


>GSVIVT01030201001 assembled CDS
          Length = 824

 Score =  102 bits (255), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 54/109 (49%), Positives = 71/109 (65%), Gaps = 2/109 (1%)

Query: 33  WLMAXXXXXXXXXXXXPTLASEQKRKEVIDYIRRLIKGYYATEVFPSGSVPLKTYLPDGD 92
           W  A            PT  SE++RKEV+DY++ LI+     EVFP GSVPLKTYLPDGD
Sbjct: 39  WARAENTVQEIICEVQPTEVSEERRKEVVDYVQGLIRVRVGCEVFPFGSVPLKTYLPDGD 98

Query: 93  IDLTVLSYQNMEEDLAREVYNMLKYEEQHPMSE--VKDVQYIQAQVKIL 139
           IDLT      +E+ LA EVY++L+ E+Q+  +E  VKDVQ I A+VK++
Sbjct: 99  IDLTAFGGPAVEDTLAYEVYSVLEAEDQNRAAEFVVKDVQLIHAEVKLV 147


>GSVIVT01027083001 assembled CDS
          Length = 1229

 Score =  100 bits (249), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 53/115 (46%), Positives = 74/115 (64%), Gaps = 3/115 (2%)

Query: 28  IDPELWLMAXXXXXXXXXXXXPTLASEQKRKEVIDYIRRLIKGYYATEVFPSGSVPLKTY 87
           +D E WL+A            P   SE+ R  V DY++R++   +  +VF  GSVPLKTY
Sbjct: 30  LDTERWLIAEERTAELIACIQPNQPSEELRNAVADYVQRIVVQCFPCQVFTFGSVPLKTY 89

Query: 88  LPDGDIDLTVLS-YQNMEEDLAREVYNMLKYEEQHPMSE--VKDVQYIQAQVKIL 139
           LPDGDIDLT  S  QN+++  A +V +ML+ EE++  +E  VK+VQYIQA+VKI+
Sbjct: 90  LPDGDIDLTAFSNNQNLKDTWANQVRDMLQSEEKNENAEFRVKEVQYIQAEVKII 144


>GSVIVT01028706001 assembled CDS
          Length = 1359

 Score = 90.9 bits (224), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 51/116 (43%), Positives = 73/116 (62%), Gaps = 3/116 (2%)

Query: 27  SIDPELWLMAXXXXXXXXXXXXPTLASEQKRKEVIDYIRRLIKGYYATEVFPSGSVPLKT 86
           ++D E   +A            P   SE++R+ V  Y++ LI   ++ +VFP GSVPLKT
Sbjct: 29  ALDQERLSLAEERTKQLIACIQPNQPSEERREAVASYVKSLIMKCFSCKVFPFGSVPLKT 88

Query: 87  YLPDGDIDLTVLSYQ-NMEEDLAREVYNMLKYEEQHPMSE--VKDVQYIQAQVKIL 139
           YLPDGDIDLT  S   N+++  A EV ++L+ EE+   +E  VK+VQYIQA+VKI+
Sbjct: 89  YLPDGDIDLTAFSKSPNLKDTWANEVRDILEREEKSGDAEFRVKEVQYIQAEVKII 144


>GSVIVT01032698001 assembled CDS
          Length = 893

 Score = 87.0 bits (214), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 55/166 (33%), Positives = 75/166 (45%), Gaps = 52/166 (31%)

Query: 26  LSIDPELWLMAXXXXXXXXXXXXPTLASEQKRKEVIDYIRRLIKGYYATE---------- 75
           +S+  E W +             PT+ SEQ+RKE+IDY++RLI+  +  E          
Sbjct: 109 MSVTAECWSITKLTIQEILCAIQPTIVSEQRRKEIIDYVQRLIRDSFGNEREIEESSRAS 168

Query: 76  -----------------------------------------VFPSGSVPLKTYLPDGDID 94
                                                    V P GS+PLKTYLPDGDID
Sbjct: 169 TFQSGDERPLFKQAMLERRNSRSIEVLLQVYFEEPKNIKLYVLPFGSMPLKTYLPDGDID 228

Query: 95  LTVLSYQNMEEDLAREVYNMLKYEEQHPMS-EVKDVQYIQAQVKIL 139
           LT L  +N EED AR+V  +L+ E Q      V+D+ YI+A+VKI+
Sbjct: 229 LTALCPENDEEDFARDVCTLLEGERQMGSEFRVEDISYIRAKVKIV 274


>GSVIVT01001781001 assembled CDS
          Length = 398

 Score = 71.2 bits (173), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 38/67 (56%), Positives = 47/67 (70%), Gaps = 2/67 (2%)

Query: 67  LIKGYYATEVFPSGSVPLKTYLPDGDIDLTVLSYQNMEEDLAREVYNMLKYEEQHPMS-- 124
           LI+     EVFP GSVPLK YL DGDIDLTVL   N+EE LA +V+ +LK E Q+  +  
Sbjct: 55  LIRCCLGCEVFPYGSVPLKIYLLDGDIDLTVLCSSNVEEALASDVHAVLKGERQNENAEF 114

Query: 125 EVKDVQY 131
           EVK+VQ+
Sbjct: 115 EVKNVQF 121