Jatropha Genome Database

JcCA0311881.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0311881.10 + phase: 2 /partial/short
         (44 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01015026001 assembled CDS                                        54   2e-08

>GSVIVT01015026001 assembled CDS
          Length = 90

 Score = 53.5 bits (127), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 34/44 (77%), Positives = 38/44 (86%)

Query: 1  NMVSLWTCSKVSIIFFVAGVFVGYTLKSRVKRWASKLLKRLKDD 44
            VSLWTCSK+  +FFVAGV VGYTLK RV+RWASKLL+RLKDD
Sbjct: 47 QAVSLWTCSKLCAVFFVAGVVVGYTLKRRVRRWASKLLRRLKDD 90