Jatropha Genome Database

JcCA0311741.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0311741.20 - phase: 0 
         (236 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01007604001 assembled CDS                                       422   e-119
GSVIVT01011156001 assembled CDS                                       111   2e-25
GSVIVT01033526001 assembled CDS                                        75   2e-14

>GSVIVT01007604001 assembled CDS
          Length = 286

 Score =  422 bits (1085), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 195/236 (82%), Positives = 221/236 (93%)

Query: 1   MQTGDEDYDLKQMRDMAAAKRRWDAMIREGKVNVLTPREAGYAIQLSSKILLDVRPSVEQ 60
           MQ  +E+Y+LKQM+DMAAA++RW+A+IRE KV +L+PREAGYAIQLS+K LLDVRPS E+
Sbjct: 51  MQAYEEEYELKQMKDMAAARKRWEALIREEKVKILSPREAGYAIQLSNKTLLDVRPSTER 110

Query: 61  KKAWVKGSTWIPIFEVDDRSDIGTLSKKFTNFMMGGWWSGVPTLTYDNQFLSKVEEKFPK 120
           KKAWVKGSTWIPIFEVDDR D+GTLS+K TNFMMGGWWSGVP L+YD+QFL+KVE+KFPK
Sbjct: 111 KKAWVKGSTWIPIFEVDDRFDVGTLSRKITNFMMGGWWSGVPALSYDSQFLTKVEQKFPK 170

Query: 121 DTDLIVACQRGLRSLAACELLYNAGYRNLFWVQGGLEAAEEEDLVIEGPQPLKFAGIGGV 180
           DTDLIVACQ+GLRSLAACELLYNAGY NLFWVQGGLEAAEEEDLV EGP+P K AGIGG+
Sbjct: 171 DTDLIVACQKGLRSLAACELLYNAGYSNLFWVQGGLEAAEEEDLVREGPEPFKLAGIGGL 230

Query: 181 SEFLGWTDQQRAAAAKEGWGYRLLFSARLIGVFLVADALFLGAQQVGRYIQDIRSH 236
           SEFLGWTDQQR AA KEGWGYRL+FSARL+GVFLVADALF+GAQQ+GRY+QDIRSH
Sbjct: 231 SEFLGWTDQQRVAATKEGWGYRLVFSARLVGVFLVADALFIGAQQLGRYLQDIRSH 286


>GSVIVT01011156001 assembled CDS
          Length = 218

 Score =  111 bits (278), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 68/162 (41%), Positives = 94/162 (58%), Gaps = 4/162 (2%)

Query: 26  MIREGKVNVLTPREAGYAIQLSSKILLDVRPSVEQKKAWVKGSTWIPIFEVD-DRSDIGT 84
           +I  G V  + P++A  A+     ILLDVRP+ E++KA V GS  +P+F  D D S I T
Sbjct: 44  LIGSGAVRPILPKDAASALNSEGFILLDVRPAWEREKARVSGSMHVPLFVKDMDNSPI-T 102

Query: 85  LSKKFTNFMMGGWWSGVPTLTYDNQFLSKVEEKFP-KDTDLIVACQRGLRSLAACELLYN 143
           L KK+ +F   G W+G      +  F+ +VE   P KD  L+VAC  GLRS+ A   L+ 
Sbjct: 103 LLKKWVHFGYIGLWTGQNFTMINPDFVGQVEIAVPDKDAKLLVACGEGLRSMMAASKLHG 162

Query: 144 AGYRNLFWVQGGLEAAEEEDLV-IEGPQPLKFAGIGGVSEFL 184
            GYRNL W+ GG   A + D   +EG + L++A IGGVS + 
Sbjct: 163 GGYRNLGWLAGGFNRANDGDFPDVEGTEKLQYATIGGVSYYF 204


>GSVIVT01033526001 assembled CDS
          Length = 234

 Score = 75.1 bits (183), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 76/157 (48%)

Query: 29  EGKVNVLTPREAGYAIQLSSKILLDVRPSVEQKKAWVKGSTWIPIFEVDDRSDIGTLSKK 88
           + +VN +   E    I +    +LDVR   +  +A +K    +P+F  +  +D+GT+ K+
Sbjct: 44  KAEVNFVNAEEGKKLIAVEGYAILDVRDKSQYDRAHIKSCYHVPLFIENQDNDLGTIIKR 103

Query: 89  FTNFMMGGWWSGVPTLTYDNQFLSKVEEKFPKDTDLIVACQRGLRSLAACELLYNAGYRN 148
             +    G + G+P    +  F+  V+ +F  ++ L++ CQ GLRS AA   L  AG+ N
Sbjct: 104 TVHNNFSGLFFGLPFTKVNPDFVQSVKSQFSPESKLLLVCQEGLRSAAAASKLEQAGFAN 163

Query: 149 LFWVQGGLEAAEEEDLVIEGPQPLKFAGIGGVSEFLG 185
           +  +  GL+  +       G   L+ AG  G+    G
Sbjct: 164 IACITSGLQTVKPGMFDSVGSTELQDAGKAGLVTIQG 200