Jatropha Genome Database

JcCA0311651.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0311651.10 + phase: 0 
         (485 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01037327001 assembled CDS                                       795   0.0  
GSVIVT01019275001 assembled CDS                                        82   5e-16
GSVIVT01027881001 assembled CDS                                        74   2e-13

>GSVIVT01037327001 assembled CDS
          Length = 536

 Score =  795 bits (2052), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/450 (84%), Positives = 408/450 (90%), Gaps = 6/450 (1%)

Query: 29  QFCEVRSGYDEAGCGIPXXXXXXXXXXXXXTVVNAHQQEVADVFVEDGIIVVVKPNIKVG 88
           +FC+  +G+ ++GC +              TVVNAH QE+ADV+VEDGIIV VKPNIKVG
Sbjct: 30  EFCDAGTGFGDSGC-VVSSKSASKLLIKGGTVVNAHHQEIADVYVEDGIIVAVKPNIKVG 88

Query: 89  DDVYVIDASGKFVMPGGIDPHTHLAMEFMSTETIDDFFSGQAAALAGGTTMHIDFVIPLN 148
           DDV V+DA+GKFVMPGGIDPHTHLAMEFM TETIDDFFSGQAAALAGGTTMHIDFVIP+ 
Sbjct: 89  DDVTVLDATGKFVMPGGIDPHTHLAMEFMGTETIDDFFSGQAAALAGGTTMHIDFVIPVK 148

Query: 149 GSLVAGFEAYKKKAKKSCMDYGFHMAVTKWDEVVSREMEIMVKENGINSFKFFMAYKGSL 208
           GSL  G EAYK KAKKSCMDYGFHMA+TKWDE VSREMEIMVKE GINSFKFF+AYKG+L
Sbjct: 149 GSLSKGLEAYKDKAKKSCMDYGFHMAITKWDENVSREMEIMVKEKGINSFKFFLAYKGAL 208

Query: 209 MINDDLLLEGLKQCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPVLVVL 268
           MIND+LLLEGLK+CKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPVL   
Sbjct: 209 MINDELLLEGLKKCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPVL--- 265

Query: 269 QLEGEATARAIRLASFINTPLYVVHVMSIDAMEEIARARKSGQRVIGEPVVSGLVLDDSK 328
             EGEATARAIRLASF+NTPLYVVHVMSIDAMEEIA+ARKSGQRVIGEPVVSGLVLDDS 
Sbjct: 266 --EGEATARAIRLASFVNTPLYVVHVMSIDAMEEIAKARKSGQRVIGEPVVSGLVLDDSG 323

Query: 329 LWDPDFTTASKYVMSPPIRPSGHDKALQAALSTGVLQLVGTDHCVFNSTQKAFGIDDFRK 388
           LWDPDF  A+KYVMSPPIR  GHDKALQAALSTG LQLVGTDHC FNSTQKAFGIDDFRK
Sbjct: 324 LWDPDFINAAKYVMSPPIRALGHDKALQAALSTGNLQLVGTDHCAFNSTQKAFGIDDFRK 383

Query: 389 IPNGVNGIEERMHLLWDTMVESGQISVTDFVRVTSTECARIFNIYPRKGAILAGSDADII 448
           IPNGVNGIEERMHL+WDTMVESGQISVTD+VR+TSTECARIFN+YPRKGAILAGSDADII
Sbjct: 384 IPNGVNGIEERMHLVWDTMVESGQISVTDYVRITSTECARIFNMYPRKGAILAGSDADII 443

Query: 449 ILNPNSSFEISARSHHSRTDTNVYEGRRGK 478
           ILNPNSSF+I+ARSHHSR DTNV+EGR+GK
Sbjct: 444 ILNPNSSFQITARSHHSRLDTNVFEGRKGK 473


>GSVIVT01019275001 assembled CDS
          Length = 128

 Score = 82.4 bits (202), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 42/80 (52%), Positives = 53/80 (66%)

Query: 324 LDDSKLWDPDFTTASKYVMSPPIRPSGHDKALQAALSTGVLQLVGTDHCVFNSTQKAFGI 383
           L +S LW    T   K ++  P R +   +A QAA STG LQLVGTDHC FNSTQKAFG+
Sbjct: 37  LGNSPLWICLKTGEGKNMLLGPHRMTESKRARQAAFSTGNLQLVGTDHCAFNSTQKAFGM 96

Query: 384 DDFRKIPNGVNGIEERMHLL 403
           +DFRKIP+ +N +E    +L
Sbjct: 97  NDFRKIPSALNVLESSTCIL 116


>GSVIVT01027881001 assembled CDS
          Length = 118

 Score = 73.9 bits (180), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 32/46 (69%), Positives = 40/46 (86%)

Query: 352 DKALQAALSTGVLQLVGTDHCVFNSTQKAFGIDDFRKIPNGVNGIE 397
           ++A QAA STG LQLVGTDHC FNSTQ+AFG++DFRKIP+ +N +E
Sbjct: 55  EEARQAAFSTGNLQLVGTDHCAFNSTQEAFGMNDFRKIPSALNVLE 100