Jatropha Genome Database

JcCA0311501.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0311501.20 + phase: 0 
         (341 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01003135001 assembled CDS                                       434   e-122
GSVIVT01018072001 assembled CDS                                       417   e-117

>GSVIVT01003135001 assembled CDS
          Length = 241

 Score =  434 bits (1116), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 211/241 (87%), Positives = 225/241 (93%)

Query: 101 MRDDALEPADLNNRNMLVVDVXXXXXXXXXXIVKHVDAKNVTILDQSPHQLAKAKQKEPL 160
           MRDDALEPADLN+RN++VVDV          IVKHVDAKNVT+LDQSPHQLAKAK+KEPL
Sbjct: 1   MRDDALEPADLNDRNLVVVDVGGGTGFTTLGIVKHVDAKNVTLLDQSPHQLAKAKKKEPL 60

Query: 161 KDCKIIEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKLGGKACLIGPVYP 220
           KDC+IIEGDAEDLPFPTDYADRYVSAGSIEYWP+PQRGIKEAYRVLK GGKAC+IGPVYP
Sbjct: 61  KDCRIIEGDAEDLPFPTDYADRYVSAGSIEYWPEPQRGIKEAYRVLKQGGKACMIGPVYP 120

Query: 221 TFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIGPKWYRGVRRHGLIMGCSVTGV 280
           TFWLSRFFADVWMLFPKEEEYIEWF+KAGF DVQLKRIGPKWYRGVRRHGLIMGCSVTGV
Sbjct: 121 TFWLSRFFADVWMLFPKEEEYIEWFEKAGFTDVQLKRIGPKWYRGVRRHGLIMGCSVTGV 180

Query: 281 KPASGDSPLQLGPKEEDVSKPVHPFVFLLRFVLGALAATYYVLVPIYMWLKDQIVPKGRP 340
           KPASGDSPLQLGPK EDVSKP +PFVF LRF+LGALA TYYVLVPIYMWLKDQ+VP+G+P
Sbjct: 181 KPASGDSPLQLGPKAEDVSKPTNPFVFFLRFILGALAGTYYVLVPIYMWLKDQLVPEGQP 240

Query: 341 I 341
           I
Sbjct: 241 I 241


>GSVIVT01018072001 assembled CDS
          Length = 241

 Score =  417 bits (1071), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 198/241 (82%), Positives = 218/241 (90%)

Query: 101 MRDDALEPADLNNRNMLVVDVXXXXXXXXXXIVKHVDAKNVTILDQSPHQLAKAKQKEPL 160
           MRD+ALEPADL +R M VVDV          IVKHVDAKNVTILDQSPHQLAKAK+KEPL
Sbjct: 1   MRDEALEPADLYDRKMTVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKEKEPL 60

Query: 161 KDCKIIEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKLGGKACLIGPVYP 220
           K+C+IIEGDAEDLPFPTDYADRY+SAGSIEYWPDPQRGI+EAYRVLK+GGKAC+IGPVYP
Sbjct: 61  KECRIIEGDAEDLPFPTDYADRYISAGSIEYWPDPQRGIREAYRVLKIGGKACIIGPVYP 120

Query: 221 TFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVQLKRIGPKWYRGVRRHGLIMGCSVTGV 280
           TFWLSRFFAD+WMLFPKEEEYIEWF+KAGFK+VQ+KRIGPKWYRGVRRHGLIMGCSVTG 
Sbjct: 121 TFWLSRFFADLWMLFPKEEEYIEWFRKAGFKNVQIKRIGPKWYRGVRRHGLIMGCSVTGE 180

Query: 281 KPASGDSPLQLGPKEEDVSKPVHPFVFLLRFVLGALAATYYVLVPIYMWLKDQIVPKGRP 340
           KP +GDSPLQLGPK EDV KPV+ FVFL R +LGA+A  Y+VL+PIYMWLKD+IVPKG P
Sbjct: 181 KPFTGDSPLQLGPKVEDVKKPVNKFVFLSRLILGAIAGAYFVLIPIYMWLKDKIVPKGWP 240

Query: 341 I 341
           I
Sbjct: 241 I 241