Jatropha Genome Database

JcCA0311501.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0311501.10 - phase: 0 /partial
         (215 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01003136001 assembled CDS                                       310   3e-85
GSVIVT01021796001 assembled CDS                                       304   2e-83
GSVIVT01035812001 assembled CDS                                       298   1e-81
GSVIVT01022402001 assembled CDS                                       218   2e-57
GSVIVT01005492001 assembled CDS                                       175   1e-44
GSVIVT01030328001 assembled CDS                                       108   3e-24
GSVIVT01030330001 assembled CDS                                       105   1e-23
GSVIVT01022397001 assembled CDS                                       103   4e-23

>GSVIVT01003136001 assembled CDS
          Length = 472

 Score =  310 bits (794), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 151/187 (80%), Positives = 166/187 (88%), Gaps = 1/187 (0%)

Query: 6   NLPSGLMHDDASPEWMNKADNAWQLTAATLVGLQSVPGLVILYGSIVKKKWAVNSAFMAL 65
            LP  L+ D+ASPEWMNK DNAWQLTAATLVGLQS+PGLVILYGSIVKKKWAVNSAFMA 
Sbjct: 2   KLPLNLIPDEASPEWMNKGDNAWQLTAATLVGLQSMPGLVILYGSIVKKKWAVNSAFMAF 61

Query: 66  YAFAAVLVCWVGWGYQMSFGNNKFAPFLGKPGVSLDQKFLLDQGFAGKFPSATMVYFQFV 125
           YAFA VLVCWVGWGY+MSFG  K APF+GKP V+LDQ +LL   F G FP+ATM+YFQFV
Sbjct: 62  YAFAMVLVCWVGWGYRMSFGE-KLAPFIGKPNVALDQGYLLKPAFLGYFPNATMIYFQFV 120

Query: 126 FAAITLILVAGALLGRMNFHAWMLFVPLWLTFSYTITAYSIWCPTGWLAKMGIIDYSGGY 185
           FAAITLIL+AGALLGRMNF AWMLFVPLWLTFSYT+ A+S+WCP GWLAK+G IDYSGGY
Sbjct: 121 FAAITLILIAGALLGRMNFRAWMLFVPLWLTFSYTVGAFSLWCPDGWLAKLGTIDYSGGY 180

Query: 186 VIHLASG 192
           VIHL+SG
Sbjct: 181 VIHLSSG 187


>GSVIVT01021796001 assembled CDS
          Length = 473

 Score =  304 bits (779), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 146/187 (78%), Positives = 166/187 (88%), Gaps = 1/187 (0%)

Query: 6   NLPSGLMHDDASPEWMNKADNAWQLTAATLVGLQSVPGLVILYGSIVKKKWAVNSAFMAL 65
            LPS L  ++ASPEWMN+ADNAWQLTAATLVG+QS+PGLVILYGS+VKKKWAVNSAFMAL
Sbjct: 2   ELPSNLQPNEASPEWMNRADNAWQLTAATLVGMQSIPGLVILYGSMVKKKWAVNSAFMAL 61

Query: 66  YAFAAVLVCWVGWGYQMSFGNNKFAPFLGKPGVSLDQKFLLDQGFAGKFPSATMVYFQFV 125
           YAFAAV++CWVGWGY+MSFG  K   FLGKPGV+LD   LL Q F G FP+ATMV+FQ V
Sbjct: 62  YAFAAVIICWVGWGYRMSFGE-KLVFFLGKPGVALDADLLLGQAFLGMFPTATMVFFQLV 120

Query: 126 FAAITLILVAGALLGRMNFHAWMLFVPLWLTFSYTITAYSIWCPTGWLAKMGIIDYSGGY 185
           FAAIT+IL+ GALLGRMNF AWMLFVPLWLTFSYTI AYS+WCP GWLAK+G+ID++GGY
Sbjct: 121 FAAITVILIGGALLGRMNFGAWMLFVPLWLTFSYTIGAYSVWCPDGWLAKLGVIDFAGGY 180

Query: 186 VIHLASG 192
           VIHL+SG
Sbjct: 181 VIHLSSG 187


>GSVIVT01035812001 assembled CDS
          Length = 485

 Score =  298 bits (762), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 144/187 (77%), Positives = 163/187 (87%), Gaps = 1/187 (0%)

Query: 6   NLPSGLMHDDASPEWMNKADNAWQLTAATLVGLQSVPGLVILYGSIVKKKWAVNSAFMAL 65
           + P  L+ D+ASPEWMNK DNAWQLTAATLVGLQ+VPGL+ILYG  VKKKWAVNSAFMA 
Sbjct: 5   SFPPNLLPDEASPEWMNKGDNAWQLTAATLVGLQTVPGLIILYGGAVKKKWAVNSAFMAF 64

Query: 66  YAFAAVLVCWVGWGYQMSFGNNKFAPFLGKPGVSLDQKFLLDQGFAGKFPSATMVYFQFV 125
           YAFA VL+CWVGWGY+MSFG  K  PF G+  V+LDQ +LLD  F GKFP ATMV+FQFV
Sbjct: 65  YAFACVLICWVGWGYRMSFGT-KLVPFWGRANVALDQVYLLDPAFIGKFPQATMVFFQFV 123

Query: 126 FAAITLILVAGALLGRMNFHAWMLFVPLWLTFSYTITAYSIWCPTGWLAKMGIIDYSGGY 185
           FAAIT++L+AGALLGRMNF+AWMLFVPLWLTFSYT  A+SIWCP+G+LAK GIIDYSGGY
Sbjct: 124 FAAITVVLIAGALLGRMNFYAWMLFVPLWLTFSYTFVAFSIWCPSGFLAKAGIIDYSGGY 183

Query: 186 VIHLASG 192
           VIHL+SG
Sbjct: 184 VIHLSSG 190


>GSVIVT01022402001 assembled CDS
          Length = 485

 Score =  218 bits (555), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 112/193 (58%), Positives = 141/193 (73%), Gaps = 20/193 (10%)

Query: 18  PEWMNKADNAWQLTAATLVGLQSVPGLVILYGSIVKKKWAVNSAFMALYAFAAVLVCWVG 77
           P+W+NK DNAWQ+ +ATLVGLQ +PGL+ILYG +VKKKWAVNSAFM  Y FAAV++CWV 
Sbjct: 18  PDWLNKGDNAWQMISATLVGLQGIPGLMILYGGLVKKKWAVNSAFMTFYGFAAVILCWVS 77

Query: 78  WGYQMSFGNNKFAPFLGKPGVSLDQKFLLDQG------------------FAGKFPSATM 119
           W Y+MSFG ++  PF GK G +L QKFLL Q                       +P A+M
Sbjct: 78  WAYRMSFG-DQLLPFWGKAGAALGQKFLLKQAALPATTHHYKNGTVETAMITPFYPMASM 136

Query: 120 VYFQFVFAAITLILVAGALLGRMNFHAWMLFVPLWLTFSYTITAYSIWCPTGWLAKMGII 179
           V+FQ VFAA+ +IL+AGA+LGRMN  AWM+FVPLWLTFSYT+ A+S+W   G+L   G++
Sbjct: 137 VWFQGVFAAVAVILLAGAVLGRMNIRAWMVFVPLWLTFSYTVGAFSLWG-GGFLFHWGVM 195

Query: 180 DYSGGYVIHLASG 192
           DYSGGYVIH++SG
Sbjct: 196 DYSGGYVIHVSSG 208


>GSVIVT01005492001 assembled CDS
          Length = 415

 Score =  175 bits (444), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 89/142 (62%), Positives = 112/142 (78%), Gaps = 3/142 (2%)

Query: 51  IVKKKWAVNSAFMALYAFAAVLVCWVGWGYQMSFGNNKFAPFLGKPGVSLDQKFLLDQGF 110
           +VKKKWAVNS+FMALYAFA VL+CWV W ++MSFG  +  P LGKP  +L QK+LL++  
Sbjct: 1   MVKKKWAVNSSFMALYAFAVVLICWVLWAHEMSFGE-RMCPILGKPNFALGQKYLLERAK 59

Query: 111 AGKFPSATMVYFQFVFAAITLILVAGALLGRMNFHAWMLFVPLWLTFSYTITAYSIWCPT 170
               P+AT V++QF FAAIT+IL+ G++LGRMNF+AWM FVPLWLTFSYTI A++IW   
Sbjct: 60  NWYIPTATYVFYQFAFAAITVILLGGSVLGRMNFYAWMSFVPLWLTFSYTIGAFNIWGSG 119

Query: 171 GWLAKMGIIDYSGGYVIHLASG 192
             L +  IID+SGGYVIHL+SG
Sbjct: 120 --LLQNRIIDFSGGYVIHLSSG 139


>GSVIVT01030328001 assembled CDS
          Length = 360

 Score =  108 bits (269), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 54/76 (71%), Positives = 65/76 (85%), Gaps = 1/76 (1%)

Query: 117 ATMVYFQFVFAAITLILVAGALLGRMNFHAWMLFVPLWLTFSYTITAYSIWCPTGWLAKM 176
           AT+VYFQF FAAITLIL+AG++LGRMN  AWM FVPLWL FSYT+ A+S+W   G+L + 
Sbjct: 2   ATLVYFQFTFAAITLILLAGSVLGRMNIKAWMAFVPLWLIFSYTVGAFSLWG-GGFLYQW 60

Query: 177 GIIDYSGGYVIHLASG 192
           G+IDYSGGYVIHL+SG
Sbjct: 61  GVIDYSGGYVIHLSSG 76


>GSVIVT01030330001 assembled CDS
          Length = 345

 Score =  105 bits (263), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 53/83 (63%), Positives = 68/83 (81%), Gaps = 1/83 (1%)

Query: 117 ATMVYFQFVFAAITLILVAGALLGRMNFHAWMLFVPLWLTFSYTITAYSIWCPTGWLAKM 176
           ATMV+FQF FAA+T+IL+AG++LGRM+  AWM FVPLW+TFSY+I A+SIW   G+L + 
Sbjct: 2   ATMVFFQFAFAAVTVILLAGSVLGRMSIKAWMAFVPLWITFSYSIGAFSIWG-GGFLFQW 60

Query: 177 GIIDYSGGYVIHLASGGCWFHCS 199
           GI+DYSGGYV+HLASG   F  +
Sbjct: 61  GIMDYSGGYVVHLASGAAGFTAA 83


>GSVIVT01022397001 assembled CDS
          Length = 353

 Score =  103 bits (258), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 53/76 (69%), Positives = 65/76 (85%), Gaps = 1/76 (1%)

Query: 117 ATMVYFQFVFAAITLILVAGALLGRMNFHAWMLFVPLWLTFSYTITAYSIWCPTGWLAKM 176
           ATMV+FQ VFAAIT+IL+AG+LLGRMN  AWM+FVPLWLTF YT+ A+S+W   G+L   
Sbjct: 2   ATMVWFQCVFAAITVILLAGSLLGRMNIRAWMMFVPLWLTFCYTVGAFSLWG-GGFLFHW 60

Query: 177 GIIDYSGGYVIHLASG 192
           G++DYSGGYVIHL+SG
Sbjct: 61  GVMDYSGGYVIHLSSG 76