Jatropha Genome Database

JcCA0311471.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0311471.20 - phase: 0 
         (298 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01027868001 assembled CDS                                       520   e-148
GSVIVT01034596001 assembled CDS                                       493   e-140

>GSVIVT01027868001 assembled CDS
          Length = 298

 Score =  520 bits (1339), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 251/298 (84%), Positives = 272/298 (91%)

Query: 1   MSDIISGVDTPVTEAKSGSDGAKVAEVKTWLASQFDAAGKEVPEFEYTSRSIAHLYNLAS 60
           MSDIISG D  V E+KS  D  ++++VK WLASQFDAAGK+VP+FEYT R+IAHL+NL++
Sbjct: 1   MSDIISGSDPSVIESKSNFDSGRISDVKAWLASQFDAAGKDVPDFEYTPRTIAHLHNLST 60

Query: 61  VSQAKTQAANILANDFRLKATEYRAQAARIREILEGVELAQEGLPSNVVGSAQVLANVAN 120
           +SQAKTQAA I+A DFR KA EYR QAAR+REILE V LAQEGLPSNVV SAQ LANVAN
Sbjct: 61  LSQAKTQAAGIVATDFRQKAAEYRCQAARVREILENVGLAQEGLPSNVVASAQCLANVAN 120

Query: 121 LLNIRDTELSSFLVAMGDISLRKTGVEEKRAKAQKESKILLDYTRKAIARLTYLKRTLAQ 180
           LLN RDTELSSFLVAMGD+SLRKTGVEEKRAK QKESKILLDYTRKAIARLTYLKRTLAQ
Sbjct: 121 LLNTRDTELSSFLVAMGDMSLRKTGVEEKRAKVQKESKILLDYTRKAIARLTYLKRTLAQ 180

Query: 181 LEDDVAPSEAQMENWKTNLAIMASKERQYLQQYSNYKAVLNRVGYTPEISHGVLVEMAEH 240
           LEDDVAP EAQMENWKTNLAIM SKERQYLQQYSNYKA+LNRVGYTPEISHGVLVEMAEH
Sbjct: 181 LEDDVAPCEAQMENWKTNLAIMVSKERQYLQQYSNYKALLNRVGYTPEISHGVLVEMAEH 240

Query: 241 RKELEKKTKPIMDALRSYKDLPPDKTLAALAIEDKKRQYAAAEKYLEDVLQSALATSD 298
           RK+LEKKTKPI+D LRSY+DLPPDK LAALAIEDKKRQYAAAEK+LEDVL SALATS+
Sbjct: 241 RKDLEKKTKPILDTLRSYQDLPPDKALAALAIEDKKRQYAAAEKHLEDVLHSALATSE 298


>GSVIVT01034596001 assembled CDS
          Length = 298

 Score =  493 bits (1270), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 241/298 (80%), Positives = 263/298 (88%)

Query: 1   MSDIISGVDTPVTEAKSGSDGAKVAEVKTWLASQFDAAGKEVPEFEYTSRSIAHLYNLAS 60
           MSD ISG D  V E +S  D  ++++VK WLASQ+DAAGK+VP+FEYT R+I  L+NL++
Sbjct: 1   MSDNISGSDPSVIEIESNFDSGRISDVKAWLASQYDAAGKDVPDFEYTPRTIGRLHNLST 60

Query: 61  VSQAKTQAANILANDFRLKATEYRAQAARIREILEGVELAQEGLPSNVVGSAQVLANVAN 120
           +SQAKTQAA ILA DFR KA EYR QAAR+REILE V L QEGLPSNVV SAQ LANVAN
Sbjct: 61  LSQAKTQAAGILATDFRQKAAEYRCQAARVREILENVGLPQEGLPSNVVASAQCLANVAN 120

Query: 121 LLNIRDTELSSFLVAMGDISLRKTGVEEKRAKAQKESKILLDYTRKAIARLTYLKRTLAQ 180
           LLN RDTELSSFLVAMGD+SLRK+ VEEKRAK QKESKILLDYTRKAIAR+TYLKR L Q
Sbjct: 121 LLNTRDTELSSFLVAMGDMSLRKSEVEEKRAKVQKESKILLDYTRKAIARMTYLKRILGQ 180

Query: 181 LEDDVAPSEAQMENWKTNLAIMASKERQYLQQYSNYKAVLNRVGYTPEISHGVLVEMAEH 240
           LEDDVAP EAQMENWKTNLAIMASKERQYLQQY NYKA+LNRVGYTPEISHGVLVEMAEH
Sbjct: 181 LEDDVAPCEAQMENWKTNLAIMASKERQYLQQYRNYKALLNRVGYTPEISHGVLVEMAEH 240

Query: 241 RKELEKKTKPIMDALRSYKDLPPDKTLAALAIEDKKRQYAAAEKYLEDVLQSALATSD 298
           RK+LEKKTKPI+D LRSY+DLPPDK LAALAIEDKK QYAAAEK LEDVLQSALATS+
Sbjct: 241 RKDLEKKTKPILDTLRSYQDLPPDKALAALAIEDKKMQYAAAEKRLEDVLQSALATSE 298