Jatropha Genome Database

JcCA0311471.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0311471.10 - phase: 0 /pseudo/partial
         (311 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01029573001 assembled CDS                                       290   4e-79
GSVIVT01033407001 assembled CDS                                        65   5e-11

>GSVIVT01029573001 assembled CDS
          Length = 396

 Score =  290 bits (743), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 151/214 (70%), Positives = 164/214 (76%), Gaps = 12/214 (5%)

Query: 45  IIYLSDKRIGSLKFPETARFPGLRTRALARELSGG-EGEDHRPLDNGXXXXXXXXXXXXX 103
           ++ +S+KR GSLK  +T+  P LR RAL+ ++SG  EGED                    
Sbjct: 37  LVKISNKRSGSLKIVDTS--PSLRLRALSGDVSGDVEGEDASGFGLASEESVSSLSQGNL 94

Query: 104 QDNN--EKDAEKIVKFETPLAV-------GGTRAGLFRTPISGGVQSATSAHGLPRPALA 154
             N   EK  +++ K E PL V       GGTRAGLFRTPISGGVQSATSAHGLPRPALA
Sbjct: 95  NHNQSPEKGVDEMSKMEMPLTVSHGSITGGGTRAGLFRTPISGGVQSATSAHGLPRPALA 154

Query: 155 VRNLMEQARFAHLCTVMSRMHHRREGYPFGSLVDFAPDPMGHPIFSFSPLAIHTRNLLAD 214
           VRNLMEQARFAHLCTVMSRMHHRREGYPFGSLVDFAPD MGHPIFSFSPLAIHTRNLLAD
Sbjct: 155 VRNLMEQARFAHLCTVMSRMHHRREGYPFGSLVDFAPDSMGHPIFSFSPLAIHTRNLLAD 214

Query: 215 PRCTLVVQIPGWSGLSNARVTIFGDVFPLPENQQ 248
           PRCTLVVQIPGWSGLSNARVTIFGDVFPLPE+QQ
Sbjct: 215 PRCTLVVQIPGWSGLSNARVTIFGDVFPLPEHQQ 248


>GSVIVT01033407001 assembled CDS
          Length = 341

 Score = 64.7 bits (156), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 31/79 (39%), Positives = 50/79 (63%), Gaps = 1/79 (1%)

Query: 170 VMSRMHHRREGYPFGSLVDFAPDPMGHPIFSFSPLAIHTRNLLADPRCTLVVQIPGWSGL 229
           ++S +  + EGYP GS+VDFA D  G+PI + S LA HT++LLA+ +C+L+V        
Sbjct: 116 MLSTISQKYEGYPSGSMVDFACDQDGYPILAVSSLANHTKDLLANTKCSLLVA-KDPEDK 174

Query: 230 SNARVTIFGDVFPLPENQQ 248
           ++  +T+ GD  P+ E  +
Sbjct: 175 TDLLITVHGDAVPVSEEDK 193