Jatropha Genome Database

JcCA0311331.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0311331.10 - phase: 0 
         (312 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01009656001 assembled CDS                                       266   1e-71
GSVIVT01019020001 assembled CDS                                       166   1e-41
GSVIVT01014154001 assembled CDS                                        99   3e-21
GSVIVT01014158001 assembled CDS                                        90   2e-18
GSVIVT01036911001 assembled CDS                                        64   8e-11
GSVIVT01021627001 assembled CDS                                        59   2e-09
GSVIVT01026920001 assembled CDS                                        59   3e-09

>GSVIVT01009656001 assembled CDS
          Length = 286

 Score =  266 bits (679), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 153/306 (50%), Positives = 169/306 (55%), Gaps = 53/306 (17%)

Query: 7   TSTSAAPRRKPSWXXXXXXXXXXXXXXAIAAKIFAGLRAQGNYNLPKHCDNNEVLKALCS 66
           TS     RRK SW              AIAAKI+AGLRAQGNY LPKHCDNNEVLKALCS
Sbjct: 2   TSERTPTRRKASWKERENNMRRERRRRAIAAKIYAGLRAQGNYRLPKHCDNNEVLKALCS 61

Query: 67  EAGWVVEDDGTTYRKGCKPPP-IDIVGTSARITXXXXXXXXXXXXXXXXXXXXXXXXXXX 125
           EAGW VEDDGTTYRKGCKPPP  +I GTS   T                           
Sbjct: 62  EAGWTVEDDGTTYRKGCKPPPSTEIAGTS---TNNTPCSSQKPSPPSSSFPSAFASYQPS 118

Query: 126 XXXXXXXRVDNNTPFNLLPFLQNAIPSSLPPLRISNSAPVXXXXXXXXXXXXXXXXNWEF 185
                   +D N   NLLPFL  +IPSSLPPLRISNSAP                     
Sbjct: 119 PSSSNLSFMDANASLNLLPFLYKSIPSSLPPLRISNSAP--------------------- 157

Query: 186 IAKQSMASLNYPFCAASAPASPTHRQFHAPATIPECDESDTSTVESGQWISFQKFAPSMA 245
                                     + APATIPE +ESDTSTVESGQW+SFQ FA  +A
Sbjct: 158 --------------------------YIAPATIPEYEESDTSTVESGQWVSFQTFARHLA 191

Query: 246 AMPTSPTYNLVKPVAGQILSGNVIQENGRSMEFEFGSVQVKPWEGERIHEIGLDDLELTL 305
            +P  PT+NL+KPVA +I      +E G + E E GS QVKPWEGERIHEIGLDDLELTL
Sbjct: 192 PLP--PTFNLMKPVAQKISPDEATKEKGITPELEIGSAQVKPWEGERIHEIGLDDLELTL 249

Query: 306 GNGKAR 311
           G+GK+R
Sbjct: 250 GSGKSR 255


>GSVIVT01019020001 assembled CDS
          Length = 201

 Score =  166 bits (421), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 90/163 (55%), Positives = 108/163 (66%), Gaps = 13/163 (7%)

Query: 149 AIPSSLPPLRISNSAPVXXXXXXXXXXXXXXXXNWEFIAKQSMASLNYPFCAASAPASPT 208
           +IP+SLPPLRISNSAPV                +WE  +  S+ S  +P  A SAP+SPT
Sbjct: 51  SIPTSLPPLRISNSAPVTPPLSSPTSRGSKRKPDWESFSNGSLNSFRHPLFAVSAPSSPT 110

Query: 209 HRQFHAPATIPECDESDTSTVESGQWISFQKFAPSMAAMPTSPTYNLVKPVAGQILSGNV 268
            R    PATIPECDESD STV+SG+W+SFQ  AP   A P+SPT+NLVKPVA +      
Sbjct: 111 RRNHLTPATIPECDESDASTVDSGRWVSFQTVAPQ--AAPSSPTFNLVKPVAME------ 162

Query: 269 IQENGRSMEFEFGSVQVKPWEGERIHEIGLDDLELTLGNGKAR 311
               GR  EFEF S +VK WEGERIHE+G+D+LELTLG+GK R
Sbjct: 163 ----GRP-EFEFESGRVKAWEGERIHEVGVDELELTLGSGKTR 200


>GSVIVT01014154001 assembled CDS
          Length = 106

 Score = 98.6 bits (244), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 55/82 (67%), Positives = 58/82 (70%), Gaps = 1/82 (1%)

Query: 15 RKPSWXXXXXXXXXXXXXXAIAAKIFAGLRAQGNYNLPKHCDNNEVLKALCSEAGWVVED 74
          R P+W              AIAAKIFAGLR  GNY LPKHCDNNEVLKALC+EAGW VE 
Sbjct: 6  RLPTWKERENNKRRERRRRAIAAKIFAGLRMYGNYKLPKHCDNNEVLKALCNEAGWTVEP 65

Query: 75 DGTTYRKGCKP-PPIDIVGTSA 95
          DGTTYRKGCKP   +DIVG SA
Sbjct: 66 DGTTYRKGCKPVERMDIVGGSA 87


>GSVIVT01014158001 assembled CDS
          Length = 264

 Score = 89.7 bits (221), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 42/67 (62%), Positives = 46/67 (68%)

Query: 15  RKPSWXXXXXXXXXXXXXXAIAAKIFAGLRAQGNYNLPKHCDNNEVLKALCSEAGWVVED 74
           R P+W              AIAAKIF+ LR  GNY LPKHCDNNEVLKALC++AGW VE 
Sbjct: 96  RLPTWKERENNNRRERRRRAIAAKIFSRLRMYGNYKLPKHCDNNEVLKALCNKAGWTVEL 155

Query: 75  DGTTYRK 81
           DGTTYRK
Sbjct: 156 DGTTYRK 162


>GSVIVT01036911001 assembled CDS
          Length = 612

 Score = 63.9 bits (154), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 31/54 (57%), Positives = 37/54 (68%), Gaps = 2/54 (3%)

Query: 34 AIAAKIFAGLRAQGNYNLPKHCDNNEVLKALCSEAGWVVEDDGTTYRKGCKPPP 87
          AI +++ AGLR  GN+ LP   D N+VL AL  EAGW VE DGTTYR+   PPP
Sbjct: 28 AITSRMLAGLRQYGNFPLPARADMNDVLAALAREAGWTVEADGTTYRQ--SPPP 79


>GSVIVT01021627001 assembled CDS
          Length = 181

 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 27/47 (57%), Positives = 31/47 (65%)

Query: 34 AIAAKIFAGLRAQGNYNLPKHCDNNEVLKALCSEAGWVVEDDGTTYR 80
          +I   IF GLR  G Y L    D NEVL+ L SEAGW+V+ DGTTYR
Sbjct: 47 SITTNIFHGLRKHGGYPLSPRADINEVLRHLASEAGWIVDPDGTTYR 93


>GSVIVT01026920001 assembled CDS
          Length = 657

 Score = 58.9 bits (141), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 28/46 (60%), Positives = 32/46 (69%)

Query: 34 AIAAKIFAGLRAQGNYNLPKHCDNNEVLKALCSEAGWVVEDDGTTY 79
          AI A+I AGLR  GNYNL    D N+V+ AL  EAGWVV  DGTT+
Sbjct: 54 AITARILAGLRRHGNYNLRVRADINDVISALAREAGWVVLPDGTTF 99