Jatropha Genome Database

JcCA0311301.40
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0311301.40 - phase: 0 /partial
         (238 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01019766001 assembled CDS                                       307   4e-84
GSVIVT01019765001 assembled CDS                                       273   6e-74
GSVIVT01010737001 assembled CDS                                       261   2e-70
GSVIVT01011101001 assembled CDS                                       243   7e-65
GSVIVT01035981001 assembled CDS                                       240   5e-64

>GSVIVT01019766001 assembled CDS
          Length = 168

 Score =  307 bits (786), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 142/168 (84%), Positives = 158/168 (94%)

Query: 71  MATQSEPKSVHDFTVKDARGNDVDLSTYKGKVLIIVNVASQCGLTNSNYTELTQLYQKYK 130
           MA+QS P+SVH FTVKDARGNDVDLS YKGK L+IVNVASQCGLTNSNYTEL QLY+KYK
Sbjct: 1   MASQSSPQSVHSFTVKDARGNDVDLSIYKGKALLIVNVASQCGLTNSNYTELHQLYEKYK 60

Query: 131 DQGLEILAFPCNQFGSQEPGTNEQIVEFACTRFKAEYPIFDKIDVNGNNAAALYKFLKSS 190
           DQGLEILAFPCNQFG+QEPG+NE+I +F CTRFKAEYPIFDKIDVNG++AA LYKFLKSS
Sbjct: 61  DQGLEILAFPCNQFGAQEPGSNEEIEKFVCTRFKAEYPIFDKIDVNGDSAAPLYKFLKSS 120

Query: 191 KGGIFGDSIKWNFTKFLADKDGNVVNRYAPTTSPLSIEKDVKKLLGIA 238
           KGG+FGD+IKWNF+KFL DKDG VV+RYAPTTSPLSIEKD+KKLLGI+
Sbjct: 121 KGGLFGDNIKWNFSKFLVDKDGKVVDRYAPTTSPLSIEKDIKKLLGIS 168


>GSVIVT01019765001 assembled CDS
          Length = 170

 Score =  273 bits (697), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 124/165 (75%), Positives = 145/165 (87%)

Query: 74  QSEPKSVHDFTVKDARGNDVDLSTYKGKVLIIVNVASQCGLTNSNYTELTQLYQKYKDQG 133
           Q  P+S++DFTVKDA G  V+LS YKGKVL+IVNVAS+CGLTNSNYTEL QLY+KYKDQG
Sbjct: 6   QQGPESIYDFTVKDAEGKSVNLSIYKGKVLLIVNVASKCGLTNSNYTELNQLYEKYKDQG 65

Query: 134 LEILAFPCNQFGSQEPGTNEQIVEFACTRFKAEYPIFDKIDVNGNNAAALYKFLKSSKGG 193
           LEILAFPCNQFG +EPG+NEQI+EF CTRFK+E+P+FDKIDVNG NAA LYKFLKS K G
Sbjct: 66  LEILAFPCNQFGEEEPGSNEQILEFVCTRFKSEFPVFDKIDVNGENAAPLYKFLKSGKWG 125

Query: 194 IFGDSIKWNFTKFLADKDGNVVNRYAPTTSPLSIEKDVKKLLGIA 238
           IFGD I+WNF KFL DK+G +V+RY PTTSPL++E DVKKLL ++
Sbjct: 126 IFGDDIQWNFGKFLVDKNGKIVDRYYPTTSPLTVENDVKKLLEVS 170


>GSVIVT01010737001 assembled CDS
          Length = 167

 Score =  261 bits (666), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 120/166 (72%), Positives = 140/166 (84%)

Query: 73  TQSEPKSVHDFTVKDARGNDVDLSTYKGKVLIIVNVASQCGLTNSNYTELTQLYQKYKDQ 132
            ++ PKS++DFTVKD RGNDV LS Y GKVL+IVNVAS+CGLT+SNY EL  LY+KYK Q
Sbjct: 2   AEAAPKSIYDFTVKDIRGNDVSLSDYNGKVLLIVNVASKCGLTHSNYKELNVLYEKYKSQ 61

Query: 133 GLEILAFPCNQFGSQEPGTNEQIVEFACTRFKAEYPIFDKIDVNGNNAAALYKFLKSSKG 192
           G EILAFPCNQF  QEPG+NE+I+E ACT FKAE+PIFDK++VNG N A LYKFLK  KG
Sbjct: 62  GFEILAFPCNQFLGQEPGSNEEILEAACTMFKAEFPIFDKVEVNGKNTAPLYKFLKLQKG 121

Query: 193 GIFGDSIKWNFTKFLADKDGNVVNRYAPTTSPLSIEKDVKKLLGIA 238
           G+FGD IKWNFTKFL DK+G VV+RYAPTTSPL IE+D++ LLG A
Sbjct: 122 GLFGDGIKWNFTKFLVDKEGKVVDRYAPTTSPLKIEEDIQNLLGSA 167


>GSVIVT01011101001 assembled CDS
          Length = 170

 Score =  243 bits (619), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 112/166 (67%), Positives = 136/166 (81%), Gaps = 1/166 (0%)

Query: 72  ATQS-EPKSVHDFTVKDARGNDVDLSTYKGKVLIIVNVASQCGLTNSNYTELTQLYQKYK 130
           A+QS   KS+H+F VKD +  DVDLS YKGKVL++VNVAS+CGLT+SNYT+LT+LY KYK
Sbjct: 3   ASQSGSEKSIHEFRVKDYKAKDVDLSVYKGKVLLVVNVASKCGLTDSNYTQLTELYNKYK 62

Query: 131 DQGLEILAFPCNQFGSQEPGTNEQIVEFACTRFKAEYPIFDKIDVNGNNAAALYKFLKSS 190
           D+G EILAFPCNQF  QEPG++EQ  EFACTR+KAEYPIF K+ VNG +AA +YKFLK+ 
Sbjct: 63  DRGFEILAFPCNQFLKQEPGSSEQAQEFACTRYKAEYPIFHKVRVNGPDAAPVYKFLKAH 122

Query: 191 KGGIFGDSIKWNFTKFLADKDGNVVNRYAPTTSPLSIEKDVKKLLG 236
           K G  G  IKWNFTKFL DK+G V+ RY PTT+PL+IE D++K LG
Sbjct: 123 KSGFLGSRIKWNFTKFLVDKEGTVLARYGPTTAPLTIEADIQKALG 168


>GSVIVT01035981001 assembled CDS
          Length = 207

 Score =  240 bits (612), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 109/164 (66%), Positives = 132/164 (80%)

Query: 72  ATQSEPKSVHDFTVKDARGNDVDLSTYKGKVLIIVNVASQCGLTNSNYTELTQLYQKYKD 131
           A  +  KS++D+TVKD    DV LS +KGKVL+IVNVAS+CGLT SNY+EL+ +Y+KYK 
Sbjct: 42  ARAATEKSLYDYTVKDIEKKDVPLSKFKGKVLLIVNVASKCGLTASNYSELSHIYEKYKT 101

Query: 132 QGLEILAFPCNQFGSQEPGTNEQIVEFACTRFKAEYPIFDKIDVNGNNAAALYKFLKSSK 191
           QG EILAFPCNQFG QEPG+N +I +FACTRFKAE+PIFDK+DVNG   A +Y+FLKS+ 
Sbjct: 102 QGFEILAFPCNQFGGQEPGSNPEIKQFACTRFKAEFPIFDKVDVNGPTTAPVYQFLKSNA 161

Query: 192 GGIFGDSIKWNFTKFLADKDGNVVNRYAPTTSPLSIEKDVKKLL 235
           GG  GD IKWNF KFL DK+G VV RY PTTSP  IEKD+++LL
Sbjct: 162 GGFLGDLIKWNFEKFLVDKNGKVVERYQPTTSPFQIEKDIQRLL 205