Jatropha Genome Database

JcCA0311301.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0311301.30 - phase: 0 
         (173 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01019765001 assembled CDS                                       291   1e-79
GSVIVT01019766001 assembled CDS                                       259   5e-70
GSVIVT01010737001 assembled CDS                                       226   5e-60
GSVIVT01035981001 assembled CDS                                       221   1e-58
GSVIVT01011101001 assembled CDS                                       213   2e-56

>GSVIVT01019765001 assembled CDS
          Length = 170

 Score =  291 bits (744), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 137/169 (81%), Positives = 155/169 (91%)

Query: 1   MASQPQKYPESVYDFTVKDAEGKDLDLGIFKGKVLLIVNVASKCGMTNSNYTELNQLYEK 60
           M+ Q Q+ PES+YDFTVKDAEGK ++L I+KGKVLLIVNVASKCG+TNSNYTELNQLYEK
Sbjct: 1   MSKQIQQGPESIYDFTVKDAEGKSVNLSIYKGKVLLIVNVASKCGLTNSNYTELNQLYEK 60

Query: 61  YKDKGLEILAFPCNQFGEEEPGSNDEIAEFVCTRFKSEFPVFDKIEVNGENASSLYKFLK 120
           YKD+GLEILAFPCNQFGEEEPGSN++I EFVCTRFKSEFPVFDKI+VNGENA+ LYKFLK
Sbjct: 61  YKDQGLEILAFPCNQFGEEEPGSNEQILEFVCTRFKSEFPVFDKIDVNGENAAPLYKFLK 120

Query: 121 SGKWGIFSDDIQWNFAKFLVDKNGQVVDRYYPTTSPLSLEVNIKLAFET 169
           SGKWGIF DDIQWNF KFLVDKNG++VDRYYPTTSPL++E ++K   E 
Sbjct: 121 SGKWGIFGDDIQWNFGKFLVDKNGKIVDRYYPTTSPLTVENDVKKLLEV 169


>GSVIVT01019766001 assembled CDS
          Length = 168

 Score =  259 bits (661), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 121/164 (73%), Positives = 147/164 (89%), Gaps = 2/164 (1%)

Query: 1   MASQPQKYPESVYDFTVKDAEGKDLDLGIFKGKVLLIVNVASKCGMTNSNYTELNQLYEK 60
           MASQ    P+SV+ FTVKDA G D+DL I+KGK LLIVNVAS+CG+TNSNYTEL+QLYEK
Sbjct: 1   MASQSS--PQSVHSFTVKDARGNDVDLSIYKGKALLIVNVASQCGLTNSNYTELHQLYEK 58

Query: 61  YKDKGLEILAFPCNQFGEEEPGSNDEIAEFVCTRFKSEFPVFDKIEVNGENASSLYKFLK 120
           YKD+GLEILAFPCNQFG +EPGSN+EI +FVCTRFK+E+P+FDKI+VNG++A+ LYKFLK
Sbjct: 59  YKDQGLEILAFPCNQFGAQEPGSNEEIEKFVCTRFKAEYPIFDKIDVNGDSAAPLYKFLK 118

Query: 121 SGKWGIFSDDIQWNFAKFLVDKNGQVVDRYYPTTSPLSLEVNIK 164
           S K G+F D+I+WNF+KFLVDK+G+VVDRY PTTSPLS+E +IK
Sbjct: 119 SSKGGLFGDNIKWNFSKFLVDKDGKVVDRYAPTTSPLSIEKDIK 162


>GSVIVT01010737001 assembled CDS
          Length = 167

 Score =  226 bits (575), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 107/156 (68%), Positives = 127/156 (81%)

Query: 9   PESVYDFTVKDAEGKDLDLGIFKGKVLLIVNVASKCGMTNSNYTELNQLYEKYKDKGLEI 68
           P+S+YDFTVKD  G D+ L  + GKVLLIVNVASKCG+T+SNY ELN LYEKYK +G EI
Sbjct: 6   PKSIYDFTVKDIRGNDVSLSDYNGKVLLIVNVASKCGLTHSNYKELNVLYEKYKSQGFEI 65

Query: 69  LAFPCNQFGEEEPGSNDEIAEFVCTRFKSEFPVFDKIEVNGENASSLYKFLKSGKWGIFS 128
           LAFPCNQF  +EPGSN+EI E  CT FK+EFP+FDK+EVNG+N + LYKFLK  K G+F 
Sbjct: 66  LAFPCNQFLGQEPGSNEEILEAACTMFKAEFPIFDKVEVNGKNTAPLYKFLKLQKGGLFG 125

Query: 129 DDIQWNFAKFLVDKNGQVVDRYYPTTSPLSLEVNIK 164
           D I+WNF KFLVDK G+VVDRY PTTSPL +E +I+
Sbjct: 126 DGIKWNFTKFLVDKEGKVVDRYAPTTSPLKIEEDIQ 161


>GSVIVT01035981001 assembled CDS
          Length = 207

 Score =  221 bits (563), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 102/155 (65%), Positives = 126/155 (81%)

Query: 10  ESVYDFTVKDAEGKDLDLGIFKGKVLLIVNVASKCGMTNSNYTELNQLYEKYKDKGLEIL 69
           +S+YD+TVKD E KD+ L  FKGKVLLIVNVASKCG+T SNY+EL+ +YEKYK +G EIL
Sbjct: 48  KSLYDYTVKDIEKKDVPLSKFKGKVLLIVNVASKCGLTASNYSELSHIYEKYKTQGFEIL 107

Query: 70  AFPCNQFGEEEPGSNDEIAEFVCTRFKSEFPVFDKIEVNGENASSLYKFLKSGKWGIFSD 129
           AFPCNQFG +EPGSN EI +F CTRFK+EFP+FDK++VNG   + +Y+FLKS   G   D
Sbjct: 108 AFPCNQFGGQEPGSNPEIKQFACTRFKAEFPIFDKVDVNGPTTAPVYQFLKSNAGGFLGD 167

Query: 130 DIQWNFAKFLVDKNGQVVDRYYPTTSPLSLEVNIK 164
            I+WNF KFLVDKNG+VV+RY PTTSP  +E +I+
Sbjct: 168 LIKWNFEKFLVDKNGKVVERYQPTTSPFQIEKDIQ 202


>GSVIVT01011101001 assembled CDS
          Length = 170

 Score =  213 bits (543), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 94/167 (56%), Positives = 130/167 (77%)

Query: 1   MASQPQKYPESVYDFTVKDAEGKDLDLGIFKGKVLLIVNVASKCGMTNSNYTELNQLYEK 60
           M +      +S+++F VKD + KD+DL ++KGKVLL+VNVASKCG+T+SNYT+L +LY K
Sbjct: 1   MGASQSGSEKSIHEFRVKDYKAKDVDLSVYKGKVLLVVNVASKCGLTDSNYTQLTELYNK 60

Query: 61  YKDKGLEILAFPCNQFGEEEPGSNDEIAEFVCTRFKSEFPVFDKIEVNGENASSLYKFLK 120
           YKD+G EILAFPCNQF ++EPGS+++  EF CTR+K+E+P+F K+ VNG +A+ +YKFLK
Sbjct: 61  YKDRGFEILAFPCNQFLKQEPGSSEQAQEFACTRYKAEYPIFHKVRVNGPDAAPVYKFLK 120

Query: 121 SGKWGIFSDDIQWNFAKFLVDKNGQVVDRYYPTTSPLSLEVNIKLAF 167
           + K G     I+WNF KFLVDK G V+ RY PTT+PL++E +I+ A 
Sbjct: 121 AHKSGFLGSRIKWNFTKFLVDKEGTVLARYGPTTAPLTIEADIQKAL 167